Transcript: Mouse NM_001104627.1

Mus musculus vomeronasal 2, receptor 16 (Vmn2r16), mRNA.

Source:
NCBI, updated 2012-09-01
Taxon:
Mus musculus (mouse)
Gene:
Vmn2r16 (384220)
Length:
2553
CDS:
1..2553

Additional Resources:

NCBI RefSeq record:
NM_001104627.1
NBCI Gene record:
Vmn2r16 (384220)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001104627.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000216468 GAAGATACATTGGGATATATA pLKO.1 328 CDS 100% 15.000 9.000 N Vmn2r16 n/a
2 TRCN0000194269 CCTGCTCATCTCTCTCATCTT pLKO.1 1875 CDS 100% 4.950 2.970 N Vmn2r16 n/a
3 TRCN0000257361 CAGACCACATTTGGAGTATTT pLKO_005 1957 CDS 100% 13.200 6.600 Y Gm20783 n/a
4 TRCN0000194270 CCTCCAAAGAGCTGTGTCATT pLKO.1 1710 CDS 100% 4.950 2.475 Y Vmn2r16 n/a
5 TRCN0000104930 CCTCCCTTTATTGACAGAGAT pLKO.1 2155 CDS 100% 4.950 2.475 Y Vmn2r122 n/a
6 TRCN0000104882 CTTTGGACCATTTAATCCTAA pLKO.1 495 CDS 100% 4.950 2.475 Y Vmn2r-ps159 n/a
7 TRCN0000185233 CAAGTTCCTAACATTCAGCAT pLKO.1 2328 CDS 100% 2.640 1.320 Y Vmn2r16 n/a
8 TRCN0000188910 GCTTTCAAGCTCACTACTCCA pLKO.1 2029 CDS 100% 2.640 1.320 Y LOC436147 n/a
9 TRCN0000028028 CCCTTTATTGACAGAGATATA pLKO.1 2158 CDS 100% 13.200 6.600 Y Vmn2r122 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001104627.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.