Transcript: Mouse NM_001109042.2

Mus musculus kinesin family member 21A (Kif21a), transcript variant 4, mRNA.

Source:
NCBI, updated 2017-06-03
Taxon:
Mus musculus (mouse)
Gene:
Kif21a (16564)
Length:
6128
CDS:
250..4953

Additional Resources:

NCBI RefSeq record:
NM_001109042.2
NBCI Gene record:
Kif21a (16564)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001109042.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000304951 TTGCCGGGAAAGACGATAATG pLKO_005 1925 CDS 100% 13.200 18.480 N Kif21a n/a
2 TRCN0000112897 CCTCATTATGATGGGATAGAA pLKO.1 4549 CDS 100% 5.625 7.875 N Kif21a n/a
3 TRCN0000112896 GCTAACTATCAAGCCGACTTA pLKO.1 2137 CDS 100% 4.950 6.930 N Kif21a n/a
4 TRCN0000315557 GCTAACTATCAAGCCGACTTA pLKO_005 2137 CDS 100% 4.950 6.930 N Kif21a n/a
5 TRCN0000112895 CGCAACTGATAATAAGCTGAT pLKO.1 990 CDS 100% 4.050 5.670 N Kif21a n/a
6 TRCN0000308303 CGCAACTGATAATAAGCTGAT pLKO_005 990 CDS 100% 4.050 5.670 N Kif21a n/a
7 TRCN0000304989 CTCAATCCATGGCTAGATAAT pLKO_005 5058 3UTR 100% 13.200 10.560 N Kif21a n/a
8 TRCN0000112898 CCCAGAAAGAGGCTCAAATTA pLKO.1 3383 CDS 100% 15.000 10.500 N Kif21a n/a
9 TRCN0000112899 GCCCAGAAAGAGGCTCAAATT pLKO.1 3382 CDS 100% 13.200 9.240 N Kif21a n/a
10 TRCN0000315486 GCCCAGAAAGAGGCTCAAATT pLKO_005 3382 CDS 100% 13.200 9.240 N Kif21a n/a
11 TRCN0000093081 GATGAGGAAGAGGAGGAAGAA pLKO.1 2044 CDS 100% 4.950 2.475 Y Gm5518 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001109042.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.