Transcript: Human NM_001127.3

Homo sapiens adaptor related protein complex 1 subunit beta 1 (AP1B1), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-06-07
Taxon:
Homo sapiens (human)
Gene:
AP1B1 (162)
Length:
4194
CDS:
188..3037

Additional Resources:

NCBI RefSeq record:
NM_001127.3
NBCI Gene record:
AP1B1 (162)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001127.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000065133 CCACACTGTTAGACGAGCTTA pLKO.1 1857 CDS 100% 4.950 6.930 N AP1B1 n/a
2 TRCN0000065135 GCCGTGAAGAACAACATCGAT pLKO.1 2630 CDS 100% 3.000 4.200 N AP1B1 n/a
3 TRCN0000382343 GGCACCCTGTCAGGATCATAT pLKO_005 2315 CDS 100% 13.200 9.240 N AP1B1 n/a
4 TRCN0000380470 GGCTTCCTGGACACCCTTAAA pLKO_005 665 CDS 100% 13.200 9.240 N AP1B1 n/a
5 TRCN0000381943 GGTCTCTCCGGTTGGTGTTAA pLKO_005 3395 3UTR 100% 13.200 9.240 N AP1B1 n/a
6 TRCN0000382186 CACACTGTTAGACGAGCTTAT pLKO_005 1858 CDS 100% 10.800 7.560 N AP1B1 n/a
7 TRCN0000382246 CTGAAGGACGAGGATCCATAT pLKO_005 575 CDS 100% 10.800 7.560 N AP1B1 n/a
8 TRCN0000381887 TCCAGACCAAGGTCAACTATG pLKO_005 1383 CDS 100% 10.800 7.560 N AP1B1 n/a
9 TRCN0000065137 CGTTGACAAGATCACAGAGTA pLKO.1 529 CDS 100% 4.950 3.465 N AP1B1 n/a
10 TRCN0000065134 CGTGAAGTACAACGACCCTAT pLKO.1 1162 CDS 100% 4.050 2.835 N AP1B1 n/a
11 TRCN0000380870 TGGACTGCCTCGCCAACTATA pLKO_005 855 CDS 100% 13.200 7.920 N AP1B1 n/a
12 TRCN0000381335 GTCAGCCTGACATGGCCATTA pLKO_005 423 CDS 100% 10.800 6.480 N AP1B1 n/a
13 TRCN0000065136 CCATTGTGAAACTCTTTCTAA pLKO.1 1647 CDS 100% 5.625 3.375 N AP1B1 n/a
14 TRCN0000100554 CTGCGCAACATCAATCTCATT pLKO.1 1094 CDS 100% 4.950 6.930 N Ap1b1 n/a
15 TRCN0000324561 CTGCGCAACATCAATCTCATT pLKO_005 1094 CDS 100% 4.950 6.930 N Ap1b1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001127.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.