Transcript: Human NM_001134437.2

Homo sapiens pleckstrin homology like domain family B member 2 (PHLDB2), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-06-01
Taxon:
Homo sapiens (human)
Gene:
PHLDB2 (90102)
Length:
5924
CDS:
257..3970

Additional Resources:

NCBI RefSeq record:
NM_001134437.2
NBCI Gene record:
PHLDB2 (90102)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001134437.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000274981 GACTATTCTGGCTCCTATTTA pLKO_005 497 CDS 100% 15.000 21.000 N PHLDB2 n/a
2 TRCN0000274980 GATCTACCTCATAGCGTAATA pLKO_005 1205 CDS 100% 13.200 18.480 N PHLDB2 n/a
3 TRCN0000137802 GACGTGATGACCTGATGGATT pLKO.1 1599 CDS 100% 4.950 6.930 N PHLDB2 n/a
4 TRCN0000135210 CTGTTGAGAACGATTCCCAAA pLKO.1 414 CDS 100% 4.050 5.670 N PHLDB2 n/a
5 TRCN0000274983 GAGGATGCTCAGAGGTTATAA pLKO_005 3067 CDS 100% 15.000 12.000 N PHLDB2 n/a
6 TRCN0000275050 ACTCATGACAGAATCTATTAT pLKO_005 3863 CDS 100% 15.000 10.500 N PHLDB2 n/a
7 TRCN0000135339 CCCTGTAGTGATGTAAGACTA pLKO.1 5470 3UTR 100% 4.950 3.465 N PHLDB2 n/a
8 TRCN0000136028 GCAGACGGCAATAATCTCTTA pLKO.1 3998 3UTR 100% 4.950 3.465 N PHLDB2 n/a
9 TRCN0000274979 GCAGACGGCAATAATCTCTTA pLKO_005 3998 3UTR 100% 4.950 3.465 N PHLDB2 n/a
10 TRCN0000137715 GCAATGGAAGAAACCCGGATA pLKO.1 2102 CDS 100% 4.050 2.835 N PHLDB2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001134437.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.