Transcript: Mouse NM_001146299.1

Mus musculus SH3 domain containing ring finger 2 (Sh3rf2), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-05-21
Taxon:
Mus musculus (mouse)
Gene:
Sh3rf2 (269016)
Length:
4784
CDS:
109..2316

Additional Resources:

NCBI RefSeq record:
NM_001146299.1
NBCI Gene record:
Sh3rf2 (269016)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001146299.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000112925 CGCTCAATATAGAACATCTTT pLKO.1 2715 3UTR 100% 5.625 7.875 N Sh3rf2 n/a
2 TRCN0000112928 GACATCAGTTATCACGCACAA pLKO.1 890 CDS 100% 4.050 5.670 N Sh3rf2 n/a
3 TRCN0000112927 CGACTATGTCATCCCAGTCTT pLKO.1 1413 CDS 100% 4.950 3.465 N Sh3rf2 n/a
4 TRCN0000112929 GAAACGCCCATCAAGAGTGAA pLKO.1 1942 CDS 100% 4.950 3.465 N Sh3rf2 n/a
5 TRCN0000112926 CCATTCTATTTGCCCACCGAA pLKO.1 2183 CDS 100% 2.640 1.848 N Sh3rf2 n/a
6 TRCN0000180280 CGGAGACAGCTTGATGAGAAT pLKO.1 571 CDS 100% 4.950 3.465 N SH3RF2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001146299.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.