Transcript: Mouse NM_001162475.1

Mus musculus stimulated by retinoic acid gene 6 (Stra6), transcript variant 3, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Stra6 (20897)
Length:
2784
CDS:
80..2092

Additional Resources:

NCBI RefSeq record:
NM_001162475.1
NBCI Gene record:
Stra6 (20897)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001162475.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000173499 GAAAGCAGCTAGTGGTTTCTT pLKO.1 2315 3UTR 100% 5.625 3.938 N Stra6 n/a
2 TRCN0000314290 GAAAGCAGCTAGTGGTTTCTT pLKO_005 2315 3UTR 100% 5.625 3.938 N Stra6 n/a
3 TRCN0000194573 CTCTACTATCCAGCCCTCTAT pLKO.1 533 CDS 100% 4.950 3.465 N Stra6 n/a
4 TRCN0000314350 CTCTACTATCCAGCCCTCTAT pLKO_005 533 CDS 100% 4.950 3.465 N Stra6 n/a
5 TRCN0000193688 CTTTGGTATCCAGTACAACTT pLKO.1 740 CDS 100% 4.950 3.465 N Stra6 n/a
6 TRCN0000314351 CTTTGGTATCCAGTACAACTT pLKO_005 740 CDS 100% 4.950 3.465 N Stra6 n/a
7 TRCN0000175720 GAGAAGTATCTGAGAACTCTT pLKO.1 821 CDS 100% 4.950 3.465 N Stra6 n/a
8 TRCN0000314289 GAGAAGTATCTGAGAACTCTT pLKO_005 821 CDS 100% 4.950 3.465 N Stra6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001162475.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.