Transcript: Human NM_001163257.1

Homo sapiens plexin B3 (PLXNB3), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-08-03
Taxon:
Homo sapiens (human)
Gene:
PLXNB3 (5365)
Length:
6377
CDS:
272..6070

Additional Resources:

NCBI RefSeq record:
NM_001163257.1
NBCI Gene record:
PLXNB3 (5365)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001163257.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000358917 ATCGCTTCTCCGCACCTAATA pLKO_005 474 CDS 100% 13.200 18.480 N PLXNB3 n/a
2 TRCN0000048218 CGCACCTAATACCACTCTCAA pLKO.1 484 CDS 100% 4.950 6.930 N PLXNB3 n/a
3 TRCN0000048222 CGACTACAACAACAGCTACGT pLKO.1 1024 CDS 100% 2.640 3.696 N PLXNB3 n/a
4 TRCN0000358919 TGTACCACCTCGGAGCATAAA pLKO_005 5720 CDS 100% 13.200 10.560 N PLXNB3 n/a
5 TRCN0000048221 CCACAGCTCATCTTTGATGTA pLKO.1 5639 CDS 100% 4.950 3.465 N PLXNB3 n/a
6 TRCN0000048219 CCAGGAGATGAACTCTGCTTT pLKO.1 5854 CDS 100% 4.950 3.465 N PLXNB3 n/a
7 TRCN0000048220 CCCAGTGAACAAACTGCTCTA pLKO.1 5755 CDS 100% 4.050 2.835 N PLXNB3 n/a
8 TRCN0000358918 AGAGGTACTATGCGGACATTC pLKO_005 5811 CDS 100% 10.800 6.480 N PLXNB3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001163257.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.