Transcript: Mouse NM_001163267.1

Mus musculus cilia and flagella associated protein 58 (Cfap58), mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Cfap58 (381229)
Length:
3345
CDS:
117..2738

Additional Resources:

NCBI RefSeq record:
NM_001163267.1
NBCI Gene record:
Cfap58 (381229)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001163267.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000376348 AGAAGTCCGTCCCTCGGTTTA pLKO_005 2671 CDS 100% 10.800 15.120 N Cfap58 n/a
2 TRCN0000342153 GGAGGTTCTCAGCGAACTTTC pLKO_005 188 CDS 100% 10.800 15.120 N Cfap58 n/a
3 TRCN0000342152 GGATGAAGCTTTGGGTATTAA pLKO_005 3049 3UTR 100% 15.000 12.000 N Cfap58 n/a
4 TRCN0000342205 CCGAATCAGAGACGAAGTTAA pLKO_005 1549 CDS 100% 13.200 10.560 N Cfap58 n/a
5 TRCN0000376288 GTGATTGCAGCTCTCTAATTA pLKO_005 2946 3UTR 100% 15.000 10.500 N Cfap58 n/a
6 TRCN0000352665 AGACATTAAAGTCCGAGAAAT pLKO_005 1499 CDS 100% 13.200 9.240 N Cfap58 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001163267.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.