Transcript: Human NM_001166345.1

Homo sapiens MyoD family inhibitor domain containing (MDFIC), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-07-16
Taxon:
Homo sapiens (human)
Gene:
MDFIC (29969)
Length:
5312
CDS:
591..1331

Additional Resources:

NCBI RefSeq record:
NM_001166345.1
NBCI Gene record:
MDFIC (29969)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001166345.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000107511 CCGCAGATAATCGCAAACTTT pLKO.1 940 CDS 100% 5.625 7.875 N MDFIC n/a
2 TRCN0000300725 CCGCAGATAATCGCAAACTTT pLKO_005 940 CDS 100% 5.625 7.875 N MDFIC n/a
3 TRCN0000107514 CCTTCGGATGGTGAACTCATT pLKO.1 783 CDS 100% 4.950 6.930 N MDFIC n/a
4 TRCN0000107513 CTTCGGATGGTGAACTCATTA pLKO.1 784 CDS 100% 13.200 10.560 N MDFIC n/a
5 TRCN0000300666 CTTCGGATGGTGAACTCATTA pLKO_005 784 CDS 100% 13.200 10.560 N MDFIC n/a
6 TRCN0000304182 TATAACTCAAGCTACCAATAG pLKO_005 716 CDS 100% 10.800 7.560 N MDFIC n/a
7 TRCN0000107510 GCAGAGAATTGCTACCAGAAT pLKO.1 2370 3UTR 100% 4.950 3.465 N MDFIC n/a
8 TRCN0000300726 GCAGAGAATTGCTACCAGAAT pLKO_005 2370 3UTR 100% 4.950 3.465 N MDFIC n/a
9 TRCN0000107512 GCTTGGAAATCTGTATGGAAT pLKO.1 1285 CDS 100% 4.950 3.465 N MDFIC n/a
10 TRCN0000331291 GCTTGGAAATCTGTATGGAAT pLKO_005 1285 CDS 100% 4.950 3.465 N MDFIC n/a
11 TRCN0000095983 TGCAACATTGTCCTGGGACAA pLKO.1 1137 CDS 100% 0.405 0.284 N Mdfic n/a
12 TRCN0000256748 GGCAGGAGAATTGCTTGAATC pLKO_005 1932 3UTR 100% 10.800 5.400 Y SMIM11A n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001166345.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.