Transcript: Mouse NM_001166375.1

Mus musculus membrane-associated ring finger (C3HC4) 1 (March1), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
March1 (72925)
Length:
3942
CDS:
8..835

Additional Resources:

NCBI RefSeq record:
NM_001166375.1
NBCI Gene record:
March1 (72925)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001166375.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000430102 CATAAGGAATGGTTGGTACAC pLKO_005 1065 3UTR 100% 4.050 5.670 N March1 n/a
2 TRCN0000173561 GAGAAGAACTTCCCGTGTAAT pLKO.1 710 CDS 100% 13.200 9.240 N March1 n/a
3 TRCN0000037022 GCAAGATATCAACCATGTATT pLKO.1 78 CDS 100% 13.200 9.240 N MARCHF1 n/a
4 TRCN0000437536 GCCTGAAAGTGTGTGCGTTAT pLKO_005 1261 3UTR 100% 10.800 7.560 N March1 n/a
5 TRCN0000421732 GGTCCTTGTATGTGTTGATAG pLKO_005 489 CDS 100% 10.800 7.560 N March1 n/a
6 TRCN0000176313 CGAAAGAAAGATGACCACATT pLKO.1 2419 3UTR 100% 4.950 3.465 N March1 n/a
7 TRCN0000175494 CCCTTGCATTAGAAACTACAT pLKO.1 1870 3UTR 100% 4.950 2.970 N March1 n/a
8 TRCN0000423956 TAATGGAGACCAAGCTCAAAC pLKO_005 369 CDS 100% 10.800 7.560 N MARCHF1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001166375.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.