Transcript: Mouse NM_001171007.1

Mus musculus nucleotide-binding oligomerization domain containing 1 (Nod1), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-08-21
Taxon:
Mus musculus (mouse)
Gene:
Nod1 (107607)
Length:
4076
CDS:
215..3076

Additional Resources:

NCBI RefSeq record:
NM_001171007.1
NBCI Gene record:
Nod1 (107607)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001171007.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000247791 CAGGGCCAGTCTTACGAATTT pLKO_005 1739 CDS 100% 13.200 18.480 N Nod1 n/a
2 TRCN0000362498 CTTTAGCCGTCTCACGGTTAT pLKO_005 2392 CDS 100% 10.800 8.640 N Nod1 n/a
3 TRCN0000247792 CGTGACGTTCCTGGGTTTATA pLKO_005 2485 CDS 100% 15.000 10.500 N Nod1 n/a
4 TRCN0000247793 CCCAGTGACTGCATGGTTATT pLKO_005 3498 3UTR 100% 13.200 9.240 N Nod1 n/a
5 TRCN0000257666 TGAGGAACTGACCAAGTATAA pLKO_005 2461 CDS 100% 13.200 9.240 N Nod1 n/a
6 TRCN0000362417 CTCACTGTACAGGTCTGTTTC pLKO_005 3548 3UTR 100% 10.800 7.560 N Nod1 n/a
7 TRCN0000362416 GAACCAGACGCTACGGCATTT pLKO_005 2896 CDS 100% 10.800 7.560 N Nod1 n/a
8 TRCN0000247790 TGGATCATCTTCCGTTGTTTC pLKO_005 1397 CDS 100% 10.800 7.560 N Nod1 n/a
9 TRCN0000194113 GCTCTTCTGTTGGATCATCTT pLKO.1 1387 CDS 100% 4.950 3.465 N Nod1 n/a
10 TRCN0000193278 CAAGTATAAGATCGTGACGTT pLKO.1 2473 CDS 100% 2.640 1.848 N Nod1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001171007.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.