Transcript: Human NM_001172631.3

Homo sapiens tectonin beta-propeller repeat containing 2 (TECPR2), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Homo sapiens (human)
Gene:
TECPR2 (9895)
Length:
4398
CDS:
249..4052

Additional Resources:

NCBI RefSeq record:
NM_001172631.3
NBCI Gene record:
TECPR2 (9895)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001172631.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000263378 TTGACCAGTGCAGCTTATTTC pLKO_005 3349 CDS 100% 13.200 18.480 N TECPR2 n/a
2 TRCN0000282593 CCATTGTGCAGCTGGATTATA pLKO_005 769 CDS 100% 15.000 10.500 N TECPR2 n/a
3 TRCN0000263379 GCAGTAGCGTGGATCAGTTAA pLKO_005 1786 CDS 100% 13.200 9.240 N TECPR2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001172631.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07505 pDONR223 100% 99.9% 99.8% None 178T>C;958G>A n/a
2 ccsbBroad304_07505 pLX_304 0% 99.9% 99.8% V5 178T>C;958G>A n/a
3 TRCN0000479288 TCATTCTCTCTTCACTTCGGGCGC pLX_317 10.4% 99.9% 99.8% V5 178T>C;958G>A n/a
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