Construct: ORF TRCN0000479288
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017445.1_s317c1
- Derived from:
- ccsbBroadEn_07505
- DNA Barcode:
- TCATTCTCTCTTCACTTCGGGCGC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TECPR2 (9895)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000479288
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9895 | TECPR2 | tectonin beta-propeller rep... | NM_001172631.3 | 99.9% | 99.8% | 178T>C;958G>A |
| 2 | human | 9895 | TECPR2 | tectonin beta-propeller rep... | NM_014844.5 | 89.5% | 89.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 3870
- ORF length:
- 3801
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat ggcatcgata tcagagcctg ttacattcag agagttctgc ccgttgtact 121 atctcctcaa tgccattccg acaaagatcc agaagggttt ccgctctatc gtggtctatc 181 tcacggccct cgacaccaac ggggactaca tcgcggtggg cagcagcatc ggcatgctct 241 atctgcactg ccggcacctc aaccagatga ggaagtacaa ctttgagggg aagacggaat 301 ctatcactgt ggtgaagctg ctgagctgct ttgatgacct ggtggcagca ggcacagcct 361 ctggcagggt tgcagttttt caacttgtat cttcattgcc agggagaaat aaacagcttc 421 ggagatttga tgtcactggt attcacaaaa atagcattac agctctggct tggagcccca 481 atggaatgaa attgttctct ggagatgaca aaggcaaaat tgtttattct tctctggatc 541 tagaccaggg gctctgtaac tcccagctgg tgttggagga gccatcttcc attgtgcagc 601 tggattatag ccagaaagtg ctgctggtct ctactctgca aagaagtctg ctcttttaca 661 ctgaagaaaa gtctgtaagg caaattggaa cacaaccaag gaaaagtact gggaaatttg 721 gtgcttgttt tataccagga ctctgtaagc aaagtgatct aaccttgtat gcgtcacggc 781 ccgggctccg gctatggaag gctgatgtcc acgggactgt tcaagccacg tttatcttaa 841 aagatgcttt tgccggggga gtcaagcctt ttgaactgca cccgcgtctg gaatccccca 901 acagtggaag ttgcagctta cctgagaggc acctggggct tgtttcatgt ttctttcaag 961 aaggctgggt gctgagttgg aatgaatata gtatctatct cctagacaca gtcaaccagg 1021 ccacaattgc tggtttggaa ggatccggtg atattgtgtc tgtttcgtgc acagaaaatg 1081 aaatattttt cttgaaagga gataggaaca ttataagaat ttcaagcagg cctgaaggat 1141 taacatcaac agtgagagat ggtctggaga tgtctggatg ctcagagcgt gtccacgtgc 1201 agcaagcgga gaagctgcca ggggccacag tttctgagac gaggctcaga ggctcttcca 1261 tggccagctc cgtggccagc gagccaagga gcaggagcag ctcgctcaac tccaccgaca 1321 gcggctccgg gctcctgccc cctgggctcc aggccacccc tgagctgggc aagggcagcc 1381 agcccctgtc acagagattc aacgccatca gctcagagga ctttgaccag gagcttgtcg 1441 tgaagcctat caaagtgaaa aggaagaaga agaagaagaa gacagaaggt ggaagcagga 1501 gcacctgtca cagctccctg gaatcgacac cctgctccga atttcctggg gacagtcccc 1561 agtccttgaa cacagacttg ctgtcgatga cctcaagtgt cctgggcagt agcgtggatc 1621 agttaagtgc agagtctcca gaccaggaaa gcagcttcaa tggtgaagtg aacggtgtcc 1681 cacaggaaaa tactgacccc gaaacgttta atgtcctgga ggtgtcagga tcaatgcctg 1741 attctctggc tgaggaagat gacattagaa ctgaaatgcc acactgtcac catgcacatg 1801 ggcgggagct gctcaatgga gcgagggaag atgtgggagg cagtgatgtc acgggactcg 1861 gagatgagcc gtgtcctgca gatgatggac caaatagcac acagttaccc ttccaagaac 1921 aggacagctc tcctggggcg catgatgggg aagacatcca acccattggc ccccaaagca 1981 ctttttgtga agtccccctc ctgaactcac tcactgtgcc ttccagcctc agctgggccc 2041 caagtgctga acagtggctg cctgggacca gagctgatga aggcagcccc gtggagccca 2101 gccaagagca ggacatccta accagcatgg aggcctctgg ccacctcagc acaaatctct 2161 ggcatgctgt cactgatgat gacacaggtc agaaagaaat acccatttct gaacgtgtct 2221 tggggagtgt gggaggacag ctgactccgg tctctgcctt ggcagccagc actcacaagc 2281 cctggcttga gcagcctcca cgggatcaga cattgacgtc cagcgatgag gaggacatct 2341 atgcccacgg gcttccttct tcatcctcag agacgagtgt gacagagctc ggacctagtt 2401 gctcccagca ggacctgagc cggctgggtg cagaggacgc cgggctgctc aagccagatc 2461 agtttgcaga aagctggatg ggctactcgg gtcccggcta tggcatcctc agcttggtgg 2521 tctccgagaa gtatatctgg tgcctggact acaaaggcgg cctgttctgc agcgcgttgc 2581 cgggcgccgg gctgcgctgg cagaagtttg aagatgctgt ccagcaggtg gcagtctcgc 2641 cctcaggagc ccttctctgg aagattgaac agaaatctaa ccgggctttt gcttgtggga 2701 aagtcaccat caaggggaag cggcactggt acgaagccct gccccaggca gtgtttgtgg 2761 ccctgagcga tgacacggcc tggatcatca ggaccagtgg ggacctatac ttgcagacag 2821 gtctgagcgt ggatcgccct tgtgccagag ccgtaaaggt ggactgtccc tacccgctgt 2881 cccagatcac agcccggaac aatgtggtgt gggcgctgac agagcagagg gccctcctgt 2941 accgggaggg cgtgagcagc ttctgtccgg aaggcgagca gtggaagtgt gacattgtca 3001 gcgaaaggca agctttagaa cccgtctgca taacgctcgg ggatcagcag actctctggg 3061 ccctggacat ccatgggaac ctgtggttca gaactggcat tatttccaag aagccccaag 3121 gagatgacga ccattggtgg caagtgagca tcacggacta tgtggtgttt gaccagtgca 3181 gcttatttca gacgataatc catgccactc actcggtggc cacagcagcc caagcccccg 3241 tagaaaaggt ggcagataag ctgcgcatgg cgttttggtc ccagcagctt cagtgccagc 3301 caagccttct cggggtcaat aacagcggtg tctggatctc ctcgggcaag aatgaattcc 3361 acgtcgctaa gggaagtctc ataggcacct actggaatca tgtggttccc cgtgggacag 3421 cttctgctac aaaatgggcc tttgtgttgg cttctgcagc tcccacgaag gaaggaagct 3481 tCCTGTGGCT GTGCCAGAGC AGCAAGGACC TGTGCAGCGT CAGCGCCCAG AGCGCACAGT 3541 CGCGGCCCTC CACGGTGCAG CTGCCTCCCG AAGCCGAGAT GCGCGCCTAT GCCGCCTGCC 3601 AGGATGCGCT GTGGGCGCTG GACAGCCTCG GCCAGGTGTT CATCAGGACG CTCTCCAAGA 3661 GCTGCCCCAC GGGCATGCAC TGGACCAGGC TGGACCTCTC CCAGCTAGGA GCTGTAAAAT 3721 TGACAAGCTT GGCATGTGGA AATCAGCACA TCTGGGCCTG TGATTCCAGG GGTGGAGTTT 3781 ACTTCCGTGT AGGGACTCAG CCTCTCAATC CCAGTCTCAT GCTTCCAGCC TGGATAATGA 3841 TTGAGCCACC TGTCCAGGTA AGCAGAAGTT TGCCAACTTT CTTGTACAAA GTGGTTGATA 3901 TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC 3961 CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGATCATT 4021 CTCTCTTCAC TTCGGGCGCA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg 4081 tgaaagatt