Transcript: Human NM_001172675.2

Homo sapiens zinc finger protein 347 (ZNF347), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-06-02
Taxon:
Homo sapiens (human)
Gene:
ZNF347 (84671)
Length:
7987
CDS:
92..2614

Additional Resources:

NCBI RefSeq record:
NM_001172675.2
NBCI Gene record:
ZNF347 (84671)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001172675.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000420098 TAACGTGTGGAAAGTTCTAAA pLKO_005 2554 CDS 100% 13.200 18.480 N ZNF347 n/a
2 TRCN0000016553 GCCTAGCTATTCATCTGGTAA pLKO.1 1422 CDS 100% 4.950 6.930 N ZNF347 n/a
3 TRCN0000435097 AGACATCCAAGAGTCCATAAT pLKO_005 3064 3UTR 100% 13.200 9.240 N ZNF347 n/a
4 TRCN0000415386 GCAAGGTCTTTAGGCGTAATT pLKO_005 1482 CDS 100% 13.200 9.240 N ZNF347 n/a
5 TRCN0000016556 CCAAGTACAAATAGCAGGAAA pLKO.1 307 CDS 100% 4.950 3.465 N ZNF347 n/a
6 TRCN0000016557 CCTTGTAAGACATCGAGGAAT pLKO.1 1171 CDS 100% 4.950 3.465 N ZNF347 n/a
7 TRCN0000016555 GAGAGTTCATACTGGAGGTAA pLKO.1 2110 CDS 100% 4.950 3.465 N ZNF347 n/a
8 TRCN0000016554 CCTCAGTATTATCTCTATGTT pLKO.1 253 CDS 100% 5.625 3.375 N ZNF347 n/a
9 TRCN0000235273 ACTGGAGAGAAACCTTATAAA pLKO_005 1112 CDS 100% 15.000 7.500 Y Gm10771 n/a
10 TRCN0000337271 ACTGGAGAGAAACCTTATAAA pLKO_005 1112 CDS 100% 15.000 7.500 Y ZNF286B n/a
11 TRCN0000429043 ACCTTACAAATGTAATGAATG pLKO_005 1291 CDS 100% 10.800 5.400 Y Rex2 n/a
12 TRCN0000151709 CAAATGTAATGAGTGTGGCAA pLKO.1 1801 CDS 100% 2.640 1.320 Y ZNF320 n/a
13 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 5757 3UTR 100% 13.200 6.600 Y LIAS n/a
14 TRCN0000021429 CACACCTGTAATCCCAGCATT pLKO.1 4833 3UTR 100% 4.950 2.475 Y ERN2 n/a
15 TRCN0000138998 CACACCTGTAATCCCAGCATT pLKO.1 4833 3UTR 100% 4.950 2.475 Y P3H4 n/a
16 TRCN0000344020 CACACCTGTAATCCCAGCATT pLKO_005 4833 3UTR 100% 4.950 2.475 Y P3H4 n/a
17 TRCN0000007228 CACCTGTAATCCCAGCACTTT pLKO.1 4835 3UTR 100% 4.950 2.475 Y CFLAR n/a
18 TRCN0000166635 CACCTGTAATCCCAGCACTTT pLKO.1 4835 3UTR 100% 4.950 2.475 Y C19orf31 n/a
19 TRCN0000150214 GTAATGAATGTGGCAAGGTTT pLKO.1 1302 CDS 100% 4.950 2.475 Y ZNF813 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001172675.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.