Transcript: Mouse NM_001177952.1

Mus musculus retinitis pigmentosa GTPase regulator (Rpgr), transcript variant 4, mRNA.

Source:
NCBI, updated 2017-06-18
Taxon:
Mus musculus (mouse)
Gene:
Rpgr (19893)
Length:
2795
CDS:
382..2337

Additional Resources:

NCBI RefSeq record:
NM_001177952.1
NBCI Gene record:
Rpgr (19893)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001177952.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000110093 CCCTTCGTGAGTACAATGAAA pLKO.1 2012 CDS 100% 5.625 7.875 N Rpgr n/a
2 TRCN0000317983 CCCTTCGTGAGTACAATGAAA pLKO_005 2012 CDS 100% 5.625 7.875 N Rpgr n/a
3 TRCN0000110094 GCCTTACAAAGTGATAAGAAA pLKO.1 2227 CDS 100% 5.625 7.875 N Rpgr n/a
4 TRCN0000110092 CCTTCTTTAATCGGATGTCAT pLKO.1 2135 CDS 100% 4.950 6.930 N Rpgr n/a
5 TRCN0000314113 CCTAAATTTGAAGACGTATAT pLKO_005 1333 CDS 100% 13.200 10.560 N Rpgr n/a
6 TRCN0000110091 CGACATGGAAAGTTAGGACTT pLKO.1 1177 CDS 100% 4.050 3.240 N Rpgr n/a
7 TRCN0000314112 ACAGATACTGGTGGCGTATAT pLKO_005 517 CDS 100% 13.200 9.240 N Rpgr n/a
8 TRCN0000047477 CCTGGATCTCTTGTGGATATT pLKO.1 788 CDS 100% 13.200 9.240 N RPGR n/a
9 TRCN0000350048 TGGATCTCTTGTGGATATTAC pLKO_005 790 CDS 100% 13.200 9.240 N Rpgr n/a
10 TRCN0000110090 CCGAGCACATTTGTTCTTCAT pLKO.1 2363 3UTR 100% 4.950 3.465 N Rpgr n/a
11 TRCN0000317984 CCGAGCACATTTGTTCTTCAT pLKO_005 2363 3UTR 100% 4.950 3.465 N Rpgr n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001177952.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.