Transcript: Mouse NM_001198914.1

Mus musculus myeloblastosis oncogene (Myb), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-06-26
Taxon:
Mus musculus (mouse)
Gene:
Myb (17863)
Length:
3777
CDS:
267..2534

Additional Resources:

NCBI RefSeq record:
NM_001198914.1
NBCI Gene record:
Myb (17863)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001198914.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000426969 GTTAGCTAAATCCCAAGTAAT pLKO_005 2997 3UTR 100% 13.200 10.560 N Myb n/a
2 TRCN0000417642 TGTCGCATTGCATGTTAATAT pLKO_005 1052 CDS 100% 15.000 10.500 N Myb n/a
3 TRCN0000042502 CAACAGCGAATATCCCTATTA pLKO.1 986 CDS 100% 13.200 9.240 N Myb n/a
4 TRCN0000042500 CCCTGGACCAAAGAAGAAGAT pLKO.1 546 CDS 100% 4.950 3.465 N Myb n/a
5 TRCN0000040059 GCTATCAAGAACCACTGGAAT pLKO.1 804 CDS 100% 4.950 3.465 N MYB n/a
6 TRCN0000288601 GCTATCAAGAACCACTGGAAT pLKO_005 804 CDS 100% 4.950 3.465 N MYB n/a
7 TRCN0000042498 GCTCCTGATGTCAACAGAGAA pLKO.1 1166 CDS 100% 4.950 3.465 N Myb n/a
8 TRCN0000042501 GCCAACTGAGAAATCGGGAAA pLKO.1 2207 CDS 100% 4.050 2.835 N Myb n/a
9 TRCN0000042499 CCATCTTTAGAACTCCAGCTA pLKO.1 1954 CDS 100% 2.640 1.848 N Myb n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001198914.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01052 pDONR223 100% 73.5% 76.2% None (many diffs) n/a
2 ccsbBroad304_01052 pLX_304 0% 73.5% 76.2% V5 (many diffs) n/a
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