Transcript: Human NM_001199183.2

Homo sapiens ATPase secretory pathway Ca2+ transporting 1 (ATP2C1), transcript variant 9, mRNA.

Source:
NCBI, updated 2019-06-02
Taxon:
Homo sapiens (human)
Gene:
ATP2C1 (27032)
Length:
3533
CDS:
297..3068

Additional Resources:

NCBI RefSeq record:
NM_001199183.2
NBCI Gene record:
ATP2C1 (27032)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001199183.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000043278 GCACGAGTATAGCAGCATTAA pLKO.1 2371 CDS 100% 13.200 18.480 N ATP2C1 n/a
2 TRCN0000043279 CCTGCTGACTTACGCTTGTTT pLKO.1 756 CDS 100% 5.625 7.875 N ATP2C1 n/a
3 TRCN0000291213 CCTGCTGACTTACGCTTGTTT pLKO_005 756 CDS 100% 5.625 7.875 N ATP2C1 n/a
4 TRCN0000043281 CGTCAGTATCACTGTGGCAAT pLKO.1 557 CDS 100% 4.050 3.240 N ATP2C1 n/a
5 TRCN0000296815 GTTACTGGAGTTGGCTATAAT pLKO_005 1371 CDS 100% 15.000 10.500 N ATP2C1 n/a
6 TRCN0000043282 CCAGTGGATAAAGATGTCATT pLKO.1 2505 CDS 100% 4.950 3.465 N ATP2C1 n/a
7 TRCN0000310147 CCAGTGGATAAAGATGTCATT pLKO_005 2505 CDS 100% 4.950 3.465 N ATP2C1 n/a
8 TRCN0000043280 GCTGCTGTAATGTGATTTGTT pLKO.1 1273 CDS 100% 5.625 3.375 N ATP2C1 n/a
9 TRCN0000307640 GCTGCTGTAATGTGATTTGTT pLKO_005 1273 CDS 100% 5.625 3.375 N ATP2C1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001199183.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14114 pDONR223 100% 92.8% 91.9% None (many diffs) n/a
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