Construct: ORF ccsbBroadEn_14114
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009086.1_s300c1, BRDN0000385440
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ATP2C1 (27032)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 27032 | ATP2C1 | ATPase secretory pathway Ca... | NM_001001485.2 | 99.9% | 99.8% | 2661delT |
| 2 | human | 27032 | ATP2C1 | ATPase secretory pathway Ca... | NM_001199185.2 | 99.9% | 99.8% | 2661delT |
| 3 | human | 27032 | ATP2C1 | ATPase secretory pathway Ca... | NM_001199179.2 | 96.2% | 95.6% | (many diffs) |
| 4 | human | 27032 | ATP2C1 | ATPase secretory pathway Ca... | NM_014382.4 | 96.2% | 95.6% | (many diffs) |
| 5 | human | 27032 | ATP2C1 | ATPase secretory pathway Ca... | NM_001001487.1 | 94.5% | 93.6% | 2630_2724del;2756delT;2760_2817del |
| 6 | human | 27032 | ATP2C1 | ATPase secretory pathway Ca... | XM_017006164.2 | 94.5% | 93.6% | 2630_2724del;2756delT;2760_2817del |
| 7 | human | 27032 | ATP2C1 | ATPase secretory pathway Ca... | NM_001199184.2 | 94.5% | 93.9% | (many diffs) |
| 8 | human | 27032 | ATP2C1 | ATPase secretory pathway Ca... | NM_001001486.1 | 93.5% | 92.6% | 2630_2754del;2786delT;2790_2847del |
| 9 | human | 27032 | ATP2C1 | ATPase secretory pathway Ca... | XM_005247355.2 | 93.5% | 92.6% | 2630_2754del;2786delT;2790_2847del |
| 10 | human | 27032 | ATP2C1 | ATPase secretory pathway Ca... | XM_005247356.3 | 93.5% | 92.6% | 2630_2754del;2786delT;2790_2847del |
| 11 | human | 27032 | ATP2C1 | ATPase secretory pathway Ca... | NM_001199183.2 | 92.8% | 91.9% | (many diffs) |
| 12 | human | 27032 | ATP2C1 | ATPase secretory pathway Ca... | NM_001199181.2 | 92.7% | 92% | (many diffs) |
| 13 | human | 27032 | ATP2C1 | ATPase secretory pathway Ca... | XM_005247358.3 | 91.8% | 90.9% | (many diffs) |
| 14 | human | 27032 | ATP2C1 | ATPase secretory pathway Ca... | NM_001199180.2 | 91.1% | 90.1% | (many diffs) |
| 15 | human | 27032 | ATP2C1 | ATPase secretory pathway Ca... | XM_005247354.2 | 90.2% | 89.2% | (many diffs) |
| 16 | human | 27032 | ATP2C1 | ATPase secretory pathway Ca... | NM_001199182.2 | 86.3% | 85.2% | (many diffs) |
| 17 | human | 27032 | ATP2C1 | ATPase secretory pathway Ca... | XM_011512686.2 | 63.7% | 60.8% | (many diffs) |
| 18 | mouse | 235574 | Atp2c1 | ATPase, Ca++-sequestering | NM_001253834.1 | 88% | 93% | (many diffs) |
| 19 | mouse | 235574 | Atp2c1 | ATPase, Ca++-sequestering | NM_175025.4 | 88% | 93% | (many diffs) |
| 20 | mouse | 235574 | Atp2c1 | ATPase, Ca++-sequestering | XM_006511710.2 | 87.6% | 92.5% | (many diffs) |
| 21 | mouse | 235574 | Atp2c1 | ATPase, Ca++-sequestering | XM_006511711.3 | 87.6% | 92.5% | (many diffs) |
| 22 | mouse | 235574 | Atp2c1 | ATPase, Ca++-sequestering | XM_006511712.3 | 87.6% | 92.5% | (many diffs) |
| 23 | mouse | 235574 | Atp2c1 | ATPase, Ca++-sequestering | XM_006511714.3 | 86.4% | 91.4% | (many diffs) |
| 24 | mouse | 235574 | Atp2c1 | ATPase, Ca++-sequestering | NM_001253831.1 | 84.8% | 89.5% | (many diffs) |
| 25 | mouse | 235574 | Atp2c1 | ATPase, Ca++-sequestering | NM_001253836.1 | 68.4% | 72.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2730
- ORF length:
- 2664
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA GGTTGCACGT TTTCAAAAAA TACCTAATGG TGAAAATGAG ACAATGATTC 121 CTGTATTGAC ATCAAAAAAA GCAAGTGAAT TACCAGTCAG TGAAGTTGCA AGCATTCTCC 181 AAGCTGATCT TCAGAATGGT CTAAACAAAT GTGAAGTTAG TCATAGGCGA GCCTTTCATG 241 GCTGGAATGA GTTTGATATT AGTGAAGATG AGCCACTGTG GAAGAAGTAT ATTTCTCAGT 301 TTAAAAATCC CCTTATTATG CTGCTTCTGG CTTCTGCAGT CATCAGTGTT TTAATGCATC 361 AGTTTGATGA TGCCGTCAGT ATCACTGTGG CAATACTTAT CGTTGTTACA GTTGCCTTTG 421 TTCAGGAATA TCGTTCAGAA AAATCTCTTG AAGAATTGAG TAAACTTGTG CCACCAGAAT 481 GCCATTGTGT GCGTGAAGGA AAATTGGAGC ATACACTTGC CCGAGACTTG GTTCCAGGTG 541 ATACAGTTTG CCTTTCTGTT GGGGATAGAG TTCCTGCTGA CTTACGCTTG TTTGAGGCTG 601 TGGATCTTTC CATTGATGAG TCCAGCTTGA CAGGTGAGAC AACGCCTTGT TCTAAGGTGA 661 CAGCTCCTCA GCCAGCTGCA ACTAATGGAG ATCTTGCATC GAGAAGTAAC ATTGCCTTTA 721 TGGGAACACT GGTCAGATGT GGCAAAGCAA AGGGTGTTGT CATTGGAACA GGAGAAAATT 781 CTGAATTTGG GGAGGTTTTT AAAATGATGC AAGCAGAAGA GGCACCAAAA ACCCCTCTGC 841 AGAAGAGCAT GGACCTCTTA GGAAAACAAC TTTCCTTTTA CTCCTTTGGT ATAATAGGAA 901 TCATCATGTT GGTTGGCTGG TTACTGGGAA AAGATATCCT GGAAATGTTT ACTATTAGTG 961 TAAGTTTGGC TGTAGCAGCA ATTCCTGAAG GTCTCCCCAT TGTGGTCACA GTGACGCTAG 1021 CTCTTGGTGT TATGAGAATG GTGAAGAAAA GGGCCATTGT GAAAAAGCTG CCTATTGTTG 1081 AAACTCTGGG CTGCTGTAAT GTGATTTGTT CAGATAAAAC TGGAACACTG ACGAAGAATG 1141 AAATGACTGT TACTCACATA TTTACTTCAG ATGGTCTGCA TGCTGAGGTT ACTGGAGTTG 1201 GCTATAATCA ATTTGGGGAA GTGATTGTTG ATGGTGATGT TGTTCATGGA TTCTATAACC 1261 CAGCTGTTAG CAGAATTGTT GAGGCGGGCT GTGTGTGCAA TGATGCTGTA ATTAGAAACA 1321 ATACTCTAAT GGGGAAGCCA ACAGAAGGGG CCTTAATTGC TCTTGCAATG AAGATGGGTC 1381 TTGATGGACT TCAACAAGAC TACATCAGAA AAGCTGAATA CCCTTTTAGC TCTGAGCAAA 1441 AGTGGATGGC TGTTAAGTGT GTACACCGAA CACAGCAGGA CAGACCAGAG ATTTGTTTTA 1501 TGAAAGGTGC TTACGAACAA GTAATTAAGT ACTGTACTAC ATACCAGAGC AAAGGGCAGA 1561 CCTTGACACT TACTCAGCAG CAGAGAGATG TGTACCAACA AGAGAAGGCA CGCATGGGCT 1621 CAGCGGGACT CAGAGTTCTT GCTTTGGCTT CTGGTCCTGA ACTGGGACAG CTGACATTTC 1681 TTGGCTTGGT GGGAATCATT GATCCACCTA GAACTGGTGT GAAAGAAGCT GTTACAACAC 1741 TCATTGCCTC AGGAGTATCA ATAAAAATGA TTACTGGAGA TTCACAGGAG ACTGCAGTTG 1801 CAATCGCCAG TCGTCTGGGA TTGTATTCCA AAACTTCCCA GTCAGTCTCA GGAGAAGAAA 1861 TAGATGCAAT GGATGTTCAG CAGCTTTCAC AAATAGTACC AAAGGTTGCA GTATTTTACA 1921 GAGCTAGCCC AAGGCACAAG ATGAAAATTA TTAAGTCGCT ACAGAAGAAC GGTTCAGTTG 1981 TAGCCATGAC AGGAGATGGA GTAAATGATG CAGTTGCTCT GAAGGCTGCA GACATTGGAG 2041 TTGCGATGGG CCAGACTGGT ACAGATGTTT GCAAAGAGGC AGCAGACATG ATCCTAGTGG 2101 ATGATGATTT TCAAACCATA ATGTCTGCAA TCGAAGAGGG TAAAGGGATT TATAATAACA 2161 TTAAAAATTT CGTTAGATTC CAGCTGAGCA CGAGTATAGC AGCATTAACT TTAATCTCAT 2221 TGGCTACATT AATGAACTTT CCTAATCCTC TCAATGCCAT GCAGATTTTG TGGATCAATA 2281 TTATTATGGA TGGACCCCCA GCTCAGAGCC TTGGAGTAGA ACCAGTGGAT AAAGATGTCA 2341 TTCGTAAACC TCCTCGCAAC TGGAAAGACA GCATTTTGAC TAAAAACTTG ATACTTAAAA 2401 TACTTGTTTC ATCAATAATC ATTGTTTGTG GGACTTTGTT TGTCTTCTGG CGTGAGCTAC 2461 GAGACAATGT GATTACACCT CGAGACACAA CAATGACCTT CACATGCTTT GTGTTTTTTG 2521 ACATGTTCAA TGCACTAAGT TCCAGATCCC AGACCAAGTC TGTGTTTGAG ATTGGACTCT 2581 GCAGTAATAG AATGTTTTGC TATGCAGTTC TTGGATCCAT CATGGGACAA TTACTAGTTA 2641 TTTACTTTCC TCCGCTTCAG AAGGTTTTTC AGACTGAGAG CCTAAGCATA CTGGGTCTGG 2701 CTCTGGGAGA GGAGTGGACA GCAGCGGTTG CCCAACTTTC TTGTACAAAG Ttggcattat 2761 aagaaagcat tgcttatcaa tttgttgcaa cgaac