Transcript: Human NM_001204204.3

Homo sapiens SEC14 like lipid binding 2 (SEC14L2), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-07-21
Taxon:
Homo sapiens (human)
Gene:
SEC14L2 (23541)
Length:
3958
CDS:
100..1062

Additional Resources:

NCBI RefSeq record:
NM_001204204.3
NBCI Gene record:
SEC14L2 (23541)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001204204.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000231868 GCCGAATCCAGATGACTATTT pLKO_005 189 CDS 100% 13.200 10.560 N SEC14L2 n/a
2 TRCN0000257214 GTGGAGACCATCACCATAATT pLKO_005 286 CDS 100% 15.000 10.500 N SEC14L2 n/a
3 TRCN0000231871 CCTGCCTCTTTGATTACTAAT pLKO_005 1685 3UTR 100% 13.200 9.240 N SEC14L2 n/a
4 TRCN0000231870 TCATGCCAAGAAGGTCAATTT pLKO_005 966 CDS 100% 13.200 9.240 N SEC14L2 n/a
5 TRCN0000019592 GTGGCCTATAACCTCATCAAA pLKO.1 448 CDS 100% 5.625 3.938 N SEC14L2 n/a
6 TRCN0000019593 CCGAAACACTGAAGCGTCTTT pLKO.1 398 CDS 100% 4.950 3.465 N SEC14L2 n/a
7 TRCN0000019591 GCCTCAGAAGAGAAGATGAAA pLKO.1 1015 CDS 100% 5.625 3.375 N SEC14L2 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001204204.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.