Transcript: Human NM_001205294.2

Homo sapiens calcium voltage-gated channel subunit alpha1 E (CACNA1E), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Homo sapiens (human)
Gene:
CACNA1E (777)
Length:
16234
CDS:
229..6984

Additional Resources:

NCBI RefSeq record:
NM_001205294.2
NBCI Gene record:
CACNA1E (777)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001205294.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000044719 GCGTTCAAATTCCTCGTGGTT pLKO.1 6123 CDS 100% 2.640 3.696 N CACNA1E n/a
2 TRCN0000420590 AGGAACGTGGAGGGTTATTAC pLKO_005 7227 3UTR 100% 13.200 10.560 N CACNA1E n/a
3 TRCN0000044721 CCGCATCCATTACACTGAGAT pLKO.1 5442 CDS 100% 4.950 3.960 N CACNA1E n/a
4 TRCN0000044722 CCAGGATTTAAGGAGGACCAA pLKO.1 3105 CDS 100% 2.640 2.112 N CACNA1E n/a
5 TRCN0000417303 GTCCTTTGAGTACACCATTAT pLKO_005 4605 CDS 100% 13.200 9.240 N CACNA1E n/a
6 TRCN0000044718 CGCAACAAAGTCCTGAGGTAT pLKO.1 3715 CDS 100% 4.950 3.465 N CACNA1E n/a
7 TRCN0000044720 GCCGCCATTTGAGTACATGAT pLKO.1 492 CDS 100% 4.950 3.465 N CACNA1E n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001205294.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.