Transcript: Mouse NM_001205346.1

Mus musculus Sad1 and UNC84 domain containing 2 (Sun2), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
Sun2 (223697)
Length:
3803
CDS:
235..2424

Additional Resources:

NCBI RefSeq record:
NM_001205346.1
NBCI Gene record:
Sun2 (223697)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001205346.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000246805 GCCCATCCAGACCTTCTATTT pLKO_005 2286 CDS 100% 13.200 18.480 N Sun2 n/a
2 TRCN0000246804 TAGGCGCCTACCAGGTGTATA pLKO_005 2642 3UTR 100% 13.200 18.480 N Sun2 n/a
3 TRCN0000246807 TCGCTACTCTCAGGATGATAA pLKO_005 261 CDS 100% 13.200 10.560 N Sun2 n/a
4 TRCN0000246808 CACCCTGAGTACACGTGTATC pLKO_005 2368 CDS 100% 10.800 7.560 N Sun2 n/a
5 TRCN0000246806 TCGGATCTTCCTCAGGCTATT pLKO_005 650 CDS 100% 10.800 7.560 N Sun2 n/a
6 TRCN0000143336 GAGGAAATCCAGCAACATGAA pLKO.1 369 CDS 100% 4.950 3.465 N SUN2 n/a
7 TRCN0000174474 CCAGGTGTATATATGTAGCAT pLKO.1 2652 3UTR 100% 3.000 2.100 N Sun2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001205346.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.