Transcript: Mouse NM_001252440.1

Mus musculus DNA segment, Chr 16, ERATO Doi 472, expressed (D16Ertd472e), transcript variant 4, mRNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
D16Ertd472e (67102)
Length:
5892
CDS:
238..1110

Additional Resources:

NCBI RefSeq record:
NM_001252440.1
NBCI Gene record:
D16Ertd472e (67102)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001252440.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000219618 CCGCCTGATTCTCGCATTAAT pLKO.1 4190 3UTR 100% 15.000 21.000 N D16Ertd472e n/a
2 TRCN0000200987 CCACATTTGCTTCGAGCTAAA pLKO.1 336 CDS 100% 10.800 15.120 N D16Ertd472e n/a
3 TRCN0000189526 CCAGGATTGTTCTCGTTCCAA pLKO.1 447 CDS 100% 3.000 4.200 N D16Ertd472e n/a
4 TRCN0000345419 CCAGGATTGTTCTCGTTCCAA pLKO_005 447 CDS 100% 3.000 4.200 N D16Ertd472e n/a
5 TRCN0000192621 GCCCTGCTTCTTAATTCTCAA pLKO.1 1917 3UTR 100% 4.950 3.960 N D16Ertd472e n/a
6 TRCN0000345422 GCCCTGCTTCTTAATTCTCAA pLKO_005 1917 3UTR 100% 4.950 3.960 N D16Ertd472e n/a
7 TRCN0000200716 GCTTCTTAATTCTCAACACTT pLKO.1 1922 3UTR 100% 4.950 3.960 N D16Ertd472e n/a
8 TRCN0000192315 CCCTGTTGAATTTCAGGCATA pLKO.1 593 CDS 100% 4.050 3.240 N D16Ertd472e n/a
9 TRCN0000345421 CCCTGTTGAATTTCAGGCATA pLKO_005 593 CDS 100% 4.050 3.240 N D16Ertd472e n/a
10 TRCN0000219617 AGTACTTATGAAGGAGTTAAA pLKO.1 478 CDS 100% 13.200 9.240 N D16Ertd472e n/a
11 TRCN0000345420 AGTACTTATGAAGGAGTTAAA pLKO_005 478 CDS 100% 13.200 9.240 N D16Ertd472e n/a
12 TRCN0000202005 CCTCAAGAACTGCTCCAAGTT pLKO.1 1032 CDS 100% 4.950 3.465 N D16Ertd472e n/a
13 TRCN0000201296 GCAGTGTTTGTAAACTGGGAA pLKO.1 290 CDS 100% 2.640 1.848 N D16Ertd472e n/a
14 TRCN0000191634 GCCATAAAGACTGCTTTGAAA pLKO.1 407 CDS 100% 5.625 3.375 N D16Ertd472e n/a
15 TRCN0000128458 GATAAACTGGATTGTGCAGTA pLKO.1 516 CDS 100% 4.050 2.430 N C21orf91 n/a
16 TRCN0000193184 CAACAACAACAACAACAGAAA pLKO.1 3735 3UTR 100% 4.950 2.475 Y Dclre1c n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001252440.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.