Transcript: Mouse NM_001252531.1

Mus musculus solute carrier organic anion transporter family, member 2b1 (Slco2b1), transcript variant 3, mRNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
Slco2b1 (101488)
Length:
4578
CDS:
290..2341

Additional Resources:

NCBI RefSeq record:
NM_001252531.1
NBCI Gene record:
Slco2b1 (101488)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001252531.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000079233 GCCTTTATATTCCAGTCTAAT pLKO.1 4102 3UTR 100% 13.200 18.480 N Slco2b1 n/a
2 TRCN0000079236 GCTACGCCTTTATGTGGACAT pLKO.1 1009 CDS 100% 4.050 5.670 N Slco2b1 n/a
3 TRCN0000079237 CTACGCCTTTATGTGGACATT pLKO.1 1010 CDS 100% 4.950 3.465 N Slco2b1 n/a
4 TRCN0000079234 GCTCGGAACTACAACAGCTAT pLKO.1 2319 CDS 100% 4.950 3.465 N Slco2b1 n/a
5 TRCN0000079235 GCTTTCAATGAGGTAGGGAAT pLKO.1 539 CDS 100% 4.050 2.835 N Slco2b1 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001252531.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.