Transcript: Mouse NM_001253685.1

Mus musculus DnaJ heat shock protein family (Hsp40) member C12 (Dnajc12), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
Dnajc12 (30045)
Length:
1168
CDS:
245..595

Additional Resources:

NCBI RefSeq record:
NM_001253685.1
NBCI Gene record:
Dnajc12 (30045)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001253685.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000273829 GAAGTTCAGAAACTATGAAAT pLKO_005 571 CDS 100% 13.200 10.560 N DNAJC12 n/a
2 TRCN0000115432 CCTGCGGAAGTTCAGAAACTA pLKO.1 565 CDS 100% 5.625 4.500 N Dnajc12 n/a
3 TRCN0000115435 CGGAAGTTCAGAAACTATGAA pLKO.1 569 CDS 100% 5.625 3.938 N Dnajc12 n/a
4 TRCN0000318127 CGGAAGTTCAGAAACTATGAA pLKO_005 569 CDS 100% 5.625 3.938 N Dnajc12 n/a
5 TRCN0000115431 GCTCTGTATCATTGATTCTTA pLKO.1 787 3UTR 100% 5.625 3.938 N Dnajc12 n/a
6 TRCN0000318128 GCTCTGTATCATTGATTCTTA pLKO_005 787 3UTR 100% 5.625 3.938 N Dnajc12 n/a
7 TRCN0000115433 CAGAAGTAAGAAGGACTTGAT pLKO.1 313 CDS 100% 4.950 3.465 N Dnajc12 n/a
8 TRCN0000318126 CAGAAGTAAGAAGGACTTGAT pLKO_005 313 CDS 100% 4.950 3.465 N Dnajc12 n/a
9 TRCN0000115434 GTTGAGCAAATCTTGGCAGAA pLKO.1 77 5UTR 100% 4.050 2.835 N Dnajc12 n/a
10 TRCN0000318057 GTTGAGCAAATCTTGGCAGAA pLKO_005 77 5UTR 100% 4.050 2.835 N Dnajc12 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001253685.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.