Transcript: Human NM_001254726.1

Homo sapiens adaptor related protein complex 4 subunit sigma 1 (AP4S1), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-08-06
Taxon:
Homo sapiens (human)
Gene:
AP4S1 (11154)
Length:
1732
CDS:
390..797

Additional Resources:

NCBI RefSeq record:
NM_001254726.1
NBCI Gene record:
AP4S1 (11154)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001254726.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000381226 TTTATAAGGTCCCTAGATATC pLKO_005 1143 3UTR 100% 10.800 15.120 N AP4S1 n/a
2 TRCN0000381699 ACCAATGAACAGCACAGTATG pLKO_005 814 3UTR 100% 10.800 7.560 N AP4S1 n/a
3 TRCN0000379984 TCTCCAGACAGTTCATCATTC pLKO_005 744 CDS 100% 10.800 7.560 N AP4S1 n/a
4 TRCN0000059847 CCAGACAGTTCATCATTCAAA pLKO.1 747 CDS 100% 5.625 3.938 N AP4S1 n/a
5 TRCN0000059846 CGACTTTCTAAGTACTATGAA pLKO.1 432 CDS 100% 5.625 3.938 N AP4S1 n/a
6 TRCN0000059844 CGAGATGGCTATTTATGAATT pLKO.1 617 CDS 100% 0.000 0.000 N AP4S1 n/a
7 TRCN0000381990 ATGAGTATTTCAGCCGAGTGA pLKO_005 664 CDS 100% 2.640 3.696 N AP4S1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001254726.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.