Transcript: Mouse NM_001256431.1

Mus musculus ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 (Agap3), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
Agap3 (213990)
Length:
2074
CDS:
31..1218

Additional Resources:

NCBI RefSeq record:
NM_001256431.1
NBCI Gene record:
Agap3 (213990)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001256431.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000424913 CGATATCTGACAGGGACTTAT pLKO_005 463 CDS 100% 13.200 18.480 N Agap3 n/a
2 TRCN0000106172 GCAACCTGTCTAGTGGGAAAT pLKO.1 428 CDS 100% 10.800 15.120 N Agap3 n/a
3 TRCN0000429939 GAGCTTAAAGTGGGCATAGTG pLKO_005 406 CDS 100% 4.950 3.960 N AGAP3 n/a
4 TRCN0000106171 CCAGAGCTTAAAGTGGGCATA pLKO.1 403 CDS 100% 4.050 3.240 N Agap3 n/a
5 TRCN0000106173 CCTACTATGAAACATGCGCAA pLKO.1 812 CDS 100% 2.160 1.728 N Agap3 n/a
6 TRCN0000430919 ATCTCCATCGAGGACTCATTT pLKO_005 346 CDS 100% 13.200 9.240 N Agap3 n/a
7 TRCN0000444944 GTTCAGCCTGGAGGATGAAAT pLKO_005 624 CDS 100% 13.200 9.240 N Agap3 n/a
8 TRCN0000429232 CCCAACATCTACGCCATCTAC pLKO_005 268 CDS 100% 4.950 2.970 N Agap3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001256431.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.