Transcript: Human NM_001270482.2

Homo sapiens proteasome 26S subunit, non-ATPase 11 (PSMD11), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Homo sapiens (human)
Gene:
PSMD11 (5717)
Length:
3971
CDS:
15..1283

Additional Resources:

NCBI RefSeq record:
NM_001270482.2
NBCI Gene record:
PSMD11 (5717)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001270482.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000003950 CCGACGTGGAAAGGAAATTAT pLKO.1 1090 CDS 100% 15.000 21.000 N PSMD11 n/a
2 TRCN0000272506 CCGACGTGGAAAGGAAATTAT pLKO_005 1090 CDS 100% 15.000 21.000 N PSMD11 n/a
3 TRCN0000065918 GTTGGATCTGTAGCGGTCCTT pLKO.1 1406 3UTR 100% 2.640 3.696 N Psmd11 n/a
4 TRCN0000272509 GGACATGCAGTCGGGTATTAT pLKO_005 644 CDS 100% 15.000 12.000 N PSMD11 n/a
5 TRCN0000313732 GGCTTACACTACCTAAAGCTG pLKO_005 1666 3UTR 100% 2.640 2.112 N Psmd11 n/a
6 TRCN0000003946 GAGTACAGATTGAACACATAT pLKO.1 1045 CDS 100% 13.200 9.240 N PSMD11 n/a
7 TRCN0000272507 CCATCGTGAAGCGTGACATTC pLKO_005 100 CDS 100% 10.800 7.560 N PSMD11 n/a
8 TRCN0000003948 CTGGTGTCTTTGTACTTTGAT pLKO.1 411 CDS 100% 5.625 3.938 N PSMD11 n/a
9 TRCN0000272450 CTGGTGTCTTTGTACTTTGAT pLKO_005 411 CDS 100% 5.625 3.938 N PSMD11 n/a
10 TRCN0000003947 CCTCATTTGGTGCATCTGTAT pLKO.1 1525 3UTR 100% 4.950 2.970 N PSMD11 n/a
11 TRCN0000272451 CCTCATTTGGTGCATCTGTAT pLKO_005 1525 3UTR 100% 4.950 2.970 N PSMD11 n/a
12 TRCN0000003949 GCAAGTCAAAGAGCAGAGCAT pLKO.1 143 CDS 100% 2.640 1.584 N PSMD11 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001270482.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.