Transcript: Mouse NM_001272031.1

Mus musculus armadillo repeat gene deleted in velocardiofacial syndrome (Arvcf), transcript variant 5, mRNA.

Source:
NCBI, updated 2017-06-03
Taxon:
Mus musculus (mouse)
Gene:
Arvcf (11877)
Length:
4330
CDS:
130..2826

Additional Resources:

NCBI RefSeq record:
NM_001272031.1
NBCI Gene record:
Arvcf (11877)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001272031.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000109621 GCTTTGAGAACGAGGGTATTA pLKO.1 1100 CDS 100% 13.200 18.480 N Arvcf n/a
2 TRCN0000219438 GGCTGACCAATATGGGCATAT pLKO.1 3789 3UTR 100% 10.800 15.120 N Arvcf n/a
3 TRCN0000219442 TGTCCTACCACGTGCACAAAG pLKO.1 1676 CDS 100% 10.800 15.120 N Arvcf n/a
4 TRCN0000109624 ACAGACTGTATGGAGCTACAA pLKO.1 2418 CDS 100% 4.950 6.930 N Arvcf n/a
5 TRCN0000109622 CTGGTAGACAAGAGCCTTGAT pLKO.1 2560 CDS 100% 4.950 6.930 N Arvcf n/a
6 TRCN0000109623 GTCCCGTGATATTCCAAGCTA pLKO.1 525 CDS 100% 3.000 4.200 N Arvcf n/a
7 TRCN0000219440 CACTAGACCAGCGGAACAAAG pLKO.1 2150 CDS 100% 10.800 8.640 N Arvcf n/a
8 TRCN0000219441 AGGAAAGACACAGATAATAAG pLKO.1 1621 CDS 100% 13.200 9.240 N Arvcf n/a
9 TRCN0000109620 GCCTGCTGTTTGTGACTTTAA pLKO.1 3470 3UTR 100% 13.200 9.240 N Arvcf n/a
10 TRCN0000219439 ATATGGCCTGGAGGATGATAC pLKO.1 717 CDS 100% 10.800 7.560 N Arvcf n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001272031.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.