Transcript: Human NM_001272087.2

Homo sapiens solute carrier family 1 member 6 (SLC1A6), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-06-02
Taxon:
Homo sapiens (human)
Gene:
SLC1A6 (6511)
Length:
3153
CDS:
1532..2470

Additional Resources:

NCBI RefSeq record:
NM_001272087.2
NBCI Gene record:
SLC1A6 (6511)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001272087.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000430836 ATGCTGGTGTTACCTCTCATT pLKO_005 1835 CDS 100% 4.950 3.465 N SLC1A6 n/a
2 TRCN0000043556 CAGAAATATGTTTCCACCAAA pLKO.1 2077 CDS 100% 4.950 3.465 N SLC1A6 n/a
3 TRCN0000043553 CCAGATCAAGTACTTCTCTTT pLKO.1 1783 CDS 100% 4.950 3.465 N SLC1A6 n/a
4 TRCN0000043554 CAGCCTCAATGAGGCTATTAT pLKO.1 2422 CDS 100% 1.500 1.050 N SLC1A6 n/a
5 TRCN0000008902 CCTCCCAAAGTGTTGGGATTA pLKO.1 742 5UTR 100% 1.080 0.540 Y GPR83 n/a
6 TRCN0000156315 CCTCCCAAAGTGTTGGGATTA pLKO.1 742 5UTR 100% 1.080 0.540 Y MYORG n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001272087.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.