Transcript: Human NM_001278478.2

Homo sapiens RUNX family transcription factor 2 (RUNX2), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-09-15
Taxon:
Homo sapiens (human)
Gene:
RUNX2 (860)
Length:
5537
CDS:
303..1760

Additional Resources:

NCBI RefSeq record:
NM_001278478.2
NBCI Gene record:
RUNX2 (860)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001278478.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000415892 AGGTTCAACGATCTGAGATTT pLKO_005 801 CDS 100% 13.200 18.480 N RUNX2 n/a
2 TRCN0000013653 GCTACCTATCACAGAGCAATT pLKO.1 891 CDS 100% 10.800 15.120 N RUNX2 n/a
3 TRCN0000412281 GATGTGCCTAGGCGCATTTCA pLKO_005 1260 CDS 100% 5.625 7.875 N RUNX2 n/a
4 TRCN0000013655 CAGCACTCCATATCTCTACTA pLKO.1 1514 CDS 100% 4.950 6.930 N RUNX2 n/a
5 TRCN0000013654 CTCAGTGATTTAGGGCGCATT pLKO.1 996 CDS 100% 4.050 3.240 N RUNX2 n/a
6 TRCN0000417324 ACCATAACCGTCTTCACAAAT pLKO_005 858 CDS 100% 13.200 9.240 N RUNX2 n/a
7 TRCN0000095590 GCACGCTATTAAATCCAAATT pLKO.1 1633 CDS 100% 13.200 9.240 N Runx2 n/a
8 TRCN0000422588 AGTGGACGAGGCAAGAGTTTC pLKO_005 831 CDS 100% 10.800 7.560 N RUNX2 n/a
9 TRCN0000434163 CAAATTTGCCTAACCAGAATG pLKO_005 1648 CDS 100% 10.800 7.560 N RUNX2 n/a
10 TRCN0000424285 CGGAATGCCTCTGCTGTTATG pLKO_005 765 CDS 100% 10.800 7.560 N RUNX2 n/a
11 TRCN0000414089 GAATCTGTTTGGCGACCATAT pLKO_005 1737 CDS 100% 10.800 7.560 N RUNX2 n/a
12 TRCN0000421148 GAGTTTCACCTTGACCATAAC pLKO_005 845 CDS 100% 10.800 7.560 N Runx2 n/a
13 TRCN0000013657 TGCACTATCCAGCCACCTTTA pLKO.1 1369 CDS 100% 10.800 7.560 N RUNX2 n/a
14 TRCN0000013656 GTGGTCCTATGACCAGTCTTA pLKO.1 1148 CDS 100% 0.495 0.347 N RUNX2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001278478.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.