Transcript: Mouse NM_001278943.1

Mus musculus ATP-binding cassette, sub-family A (ABC1), member 16 (Abca16), transcript variant 1, mRNA.

Source:
NCBI, updated 2015-03-25
Taxon:
Mus musculus (mouse)
Gene:
Abca16 (233810)
Length:
4617
CDS:
618..4601

Additional Resources:

NCBI RefSeq record:
NM_001278943.1
NBCI Gene record:
Abca16 (233810)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001278943.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000113428 CCTGTAAATGGATTGCAAATA pLKO.1 2739 CDS 100% 13.200 18.480 N Abca16 n/a
2 TRCN0000113427 CCGGGAATCATTGGTCATGTA pLKO.1 3896 CDS 100% 4.950 6.930 N Abca16 n/a
3 TRCN0000113429 CCATCTAATCAGAGAACCAAA pLKO.1 3522 CDS 100% 4.950 3.960 N Abca16 n/a
4 TRCN0000113426 CAGGAATTTCATGGGACTATT pLKO.1 4401 CDS 100% 13.200 9.240 N Abca16 n/a
5 TRCN0000113425 CTTCTCAACTATGTTCAGTAT pLKO.1 3113 CDS 100% 4.950 3.465 N Abca16 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001278943.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.