Transcript: Human NM_001282237.2

Homo sapiens BAF chromatin remodeling complex subunit BCL11B (BCL11B), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Homo sapiens (human)
Gene:
BCL11B (64919)
Length:
8525
CDS:
980..3661

Additional Resources:

NCBI RefSeq record:
NM_001282237.2
NBCI Gene record:
BCL11B (64919)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001282237.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000033481 CGGCGAGCACTTGCTGACTAA pLKO.1 3607 CDS 100% 1.650 2.310 N BCL11B n/a
2 TRCN0000433876 TCCCGTCCGAGAACGTGTACT pLKO_005 3081 CDS 100% 1.650 2.310 N BCL11B n/a
3 TRCN0000414002 CATGAAGACGCACGGGCAGAT pLKO_005 3502 CDS 100% 1.350 1.890 N BCL11B n/a
4 TRCN0000033479 CCAGCTACATTTGCACAACAT pLKO.1 1632 CDS 100% 4.950 3.960 N BCL11B n/a
5 TRCN0000432291 TGGAAACCCGAGGGTTGATTA pLKO_005 3823 3UTR 100% 13.200 9.240 N BCL11B n/a
6 TRCN0000433432 ATGACTCGCAAGCAATGTTAG pLKO_005 4028 3UTR 100% 10.800 7.560 N BCL11B n/a
7 TRCN0000238420 TGAGCCTTCCAGCTACATTTG pLKO_005 1624 CDS 100% 10.800 7.560 N Bcl11b n/a
8 TRCN0000437022 AGAGCAAGTCGTGCGAGTTCT pLKO_005 2250 CDS 100% 4.950 3.465 N BCL11B n/a
9 TRCN0000238421 AGATGCCCTTCAGCGTCTACA pLKO_005 3555 CDS 100% 4.950 3.465 N Bcl11b n/a
10 TRCN0000238419 CAAGTTCCAGAGCAATCTCAT pLKO_005 2284 CDS 100% 4.950 3.465 N Bcl11b n/a
11 TRCN0000033482 GTTCAAGAACTGCAGCAACTT pLKO.1 3388 CDS 100% 4.950 3.465 N BCL11B n/a
12 TRCN0000429728 AGTTCCAGAGCAATCTCATCG pLKO_005 2286 CDS 100% 4.050 2.835 N BCL11B n/a
13 TRCN0000441656 AGTCGAGCTTCAGCATGGACT pLKO_005 2634 CDS 100% 2.640 1.848 N BCL11B n/a
14 TRCN0000436190 CCAGATGCCCTTCAGCGTCTA pLKO_005 3553 CDS 100% 1.350 0.945 N BCL11B n/a
15 TRCN0000033483 GCTGGGCAAGGTCATGGAGAA pLKO.1 2758 CDS 100% 1.350 0.945 N BCL11B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001282237.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.