Transcript: Human NM_001282908.1

Homo sapiens chaperonin containing TCP1 subunit 8 (CCT8), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-08-06
Taxon:
Homo sapiens (human)
Gene:
CCT8 (10694)
Length:
2032
CDS:
386..1879

Additional Resources:

NCBI RefSeq record:
NM_001282908.1
NBCI Gene record:
CCT8 (10694)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001282908.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000150980 CAAACGATGCAGCAACTATTT pLKO.1 429 CDS 100% 13.200 9.240 N CCT8 n/a
2 TRCN0000428239 CGTACCTCCATAATGAGTAAA pLKO_005 725 CDS 100% 13.200 9.240 N CCT8 n/a
3 TRCN0000438803 ACATGCTGGAAGCTGGTATTC pLKO_005 1704 CDS 100% 10.800 7.560 N CCT8 n/a
4 TRCN0000183655 CAGTAGACGATGGTGTTAATA pLKO.1 1404 CDS 100% 15.000 9.000 N CCT8 n/a
5 TRCN0000423181 GACTTGAACAGTATGCTATTA pLKO_005 1527 CDS 100% 13.200 7.920 N CCT8 n/a
6 TRCN0000420385 GCAGTAGACGATGGTGTTAAT pLKO_005 1403 CDS 100% 13.200 7.920 N CCT8 n/a
7 TRCN0000442235 GCTCAGGCATGCGTATCTATT pLKO_005 782 CDS 100% 13.200 7.920 N CCT8 n/a
8 TRCN0000183512 GCACAAACTTTGTTCTGGTAT pLKO.1 531 CDS 100% 4.950 2.970 N CCT8 n/a
9 TRCN0000151542 GTGTTGATAAAGACTGCTGAA pLKO.1 1001 CDS 100% 4.050 2.430 N CCT8 n/a
10 TRCN0000152385 GCCAAACAGATCACATCATAT pLKO.1 1490 CDS 100% 13.200 6.600 Y CCT8 n/a
11 TRCN0000183584 GCCAATGAAGTAATCTCTAAA pLKO.1 1610 CDS 100% 13.200 6.600 Y CCT8 n/a
12 TRCN0000150502 GAGGCTGTGTATAGAAACATA pLKO.1 311 5UTR 100% 5.625 2.813 Y CCT8 n/a
13 TRCN0000120474 GCTGAAGAACTTCTGAGGATT pLKO.1 575 CDS 100% 4.950 2.475 Y Cct8 n/a
14 TRCN0000350212 GCTGAAGAACTTCTGAGGATT pLKO_005 575 CDS 100% 4.950 2.475 Y Cct8 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001282908.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.