Transcript: Mouse NM_001284385.1

Mus musculus RIKEN cDNA 3830406C13 gene (3830406C13Rik), transcript variant 5, mRNA.

Source:
NCBI, updated 2017-06-03
Taxon:
Mus musculus (mouse)
Gene:
3830406C13Rik (218734)
Length:
2498
CDS:
163..546

Additional Resources:

NCBI RefSeq record:
NM_001284385.1
NBCI Gene record:
3830406C13Rik (218734)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001284385.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000195792 CAGCCTTCGATGCTTTCTCTT pLKO.1 391 CDS 100% 4.950 3.960 N 3830406C13Rik n/a
2 TRCN0000345725 CAGCCTTCGATGCTTTCTCTT pLKO_005 391 CDS 100% 4.950 3.960 N 3830406C13Rik n/a
3 TRCN0000179815 CGAGGCAAAGTTGTAACTTAT pLKO.1 531 CDS 100% 13.200 9.240 N 3830406C13Rik n/a
4 TRCN0000353255 CGAGGCAAAGTTGTAACTTAT pLKO_005 531 CDS 100% 13.200 9.240 N 3830406C13Rik n/a
5 TRCN0000184686 CCACTGAGACTGCTTCTAGAA pLKO.1 299 CDS 100% 4.950 3.465 N 3830406C13Rik n/a
6 TRCN0000345722 CCACTGAGACTGCTTCTAGAA pLKO_005 299 CDS 100% 4.950 3.465 N 3830406C13Rik n/a
7 TRCN0000195837 CCGACTCTTGAAGGACATAGA pLKO.1 327 CDS 100% 4.950 3.465 N 3830406C13Rik n/a
8 TRCN0000345723 CCGACTCTTGAAGGACATAGA pLKO_005 327 CDS 100% 4.950 3.465 N 3830406C13Rik n/a
9 TRCN0000415796 GACTCGTTACTGGGCATCAGT pLKO_005 414 CDS 100% 3.000 2.100 N C3orf14 n/a
10 TRCN0000196048 GAAGGACATAGATGCTGCAGA pLKO.1 336 CDS 100% 2.640 1.848 N 3830406C13Rik n/a
11 TRCN0000345724 GAAGGACATAGATGCTGCAGA pLKO_005 336 CDS 100% 2.640 1.848 N 3830406C13Rik n/a
12 TRCN0000432609 ACTGGGCATCAGTAGAAGAAT pLKO_005 422 CDS 100% 5.625 3.938 N C3orf14 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001284385.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.