Transcript: Human NM_001286366.2

Homo sapiens MAP7 domain containing 1 (MAP7D1), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-08-09
Taxon:
Homo sapiens (human)
Gene:
MAP7D1 (55700)
Length:
3276
CDS:
259..2685

Additional Resources:

NCBI RefSeq record:
NM_001286366.2
NBCI Gene record:
MAP7D1 (55700)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001286366.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000323264 GCTGGAGGAGCAACGTCTTAA pLKO_005 801 CDS 100% 13.200 18.480 N MAP7D1 n/a
2 TRCN0000091389 CGTGGACTCTATAATCAACAA pLKO.1 1041 CDS 100% 4.950 6.930 N Map7d1 n/a
3 TRCN0000323345 CAAACACGTGGACTCTATAAT pLKO_005 1035 CDS 100% 15.000 10.500 N MAP7D1 n/a
4 TRCN0000323346 CAGGTCACAGAAGTCCTTTAA pLKO_005 2665 CDS 100% 13.200 9.240 N MAP7D1 n/a
5 TRCN0000323265 GACTCGGAAGTCAGAAGTTTC pLKO_005 2316 CDS 100% 10.800 7.560 N MAP7D1 n/a
6 TRCN0000108294 GCAGGTCACAGAAGTCCTTTA pLKO.1 2664 CDS 100% 10.800 7.560 N MAP7D1 n/a
7 TRCN0000108291 GCAGAAGCCTTCCTCAAGAAA pLKO.1 2626 CDS 100% 5.625 3.938 N MAP7D1 n/a
8 TRCN0000108290 CCTCTCTCTATTTAACTGTAA pLKO.1 3106 3UTR 100% 4.950 3.465 N MAP7D1 n/a
9 TRCN0000108292 CAGAAGTCCTTTAAGAGGGTT pLKO.1 2672 CDS 100% 2.640 1.848 N MAP7D1 n/a
10 TRCN0000108293 CCAGAGACACTCCTGCCCTTT pLKO.1 2599 CDS 100% 1.350 0.945 N MAP7D1 n/a
11 TRCN0000323263 AGATCTTCCTCTCTCTATTTA pLKO_005 3099 3UTR 100% 15.000 9.000 N MAP7D1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001286366.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.