Transcript: Human NM_001286381.1

Homo sapiens family with sequence similarity 120B (FAM120B), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-08-05
Taxon:
Homo sapiens (human)
Gene:
FAM120B (84498)
Length:
3275
CDS:
211..939

Additional Resources:

NCBI RefSeq record:
NM_001286381.1
NBCI Gene record:
FAM120B (84498)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001286381.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000138722 GCTGTCGAAAGCCCATTTCAA pLKO.1 340 CDS 100% 5.625 7.875 N FAM120B n/a
2 TRCN0000232823 GAGGATTTGCATGCGTTTATT pLKO_005 415 CDS 100% 15.000 10.500 N FAM120B n/a
3 TRCN0000232824 ACATCTTCATGTGTTTCATTC pLKO_005 1180 3UTR 100% 10.800 7.560 N FAM120B n/a
4 TRCN0000135825 CTTGCATGAAGAAGGAACGAT pLKO.1 1058 3UTR 100% 3.000 2.100 N FAM120B n/a
5 TRCN0000137815 GCTTGCATGAAGAAGGAACGA pLKO.1 1057 3UTR 100% 2.640 1.848 N FAM120B n/a
6 TRCN0000136380 CCAGAAAGAGTATGGAGAGAA pLKO.1 947 3UTR 100% 4.950 2.970 N FAM120B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001286381.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.