Transcript: Mouse NM_001302538.1

Mus musculus zinc finger, BED type containing 3 (Zbed3), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-04-23
Taxon:
Mus musculus (mouse)
Gene:
Zbed3 (72114)
Length:
1971
CDS:
181..867

Additional Resources:

NCBI RefSeq record:
NM_001302538.1
NBCI Gene record:
Zbed3 (72114)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001302538.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000219591 AGGGCAATCTGACCATTATAT pLKO.1 1770 3UTR 100% 15.000 21.000 N Zbed3 n/a
2 TRCN0000339276 TAAGCCAGAAGGTTCTCTAAA pLKO_005 1002 3UTR 100% 13.200 10.560 N Zbed3 n/a
3 TRCN0000339207 TCTGAAGCAGGAGGCACAATC pLKO_005 663 CDS 100% 10.800 7.560 N Zbed3 n/a
4 TRCN0000197612 CACTGAGTAAGTGGATAAAGA pLKO.1 725 CDS 100% 5.625 3.938 N Zbed3 n/a
5 TRCN0000339277 GACAACAACAGTGACAATGAT pLKO_005 823 CDS 100% 5.625 3.938 N Zbed3 n/a
6 TRCN0000339274 CTTAATGACCCAGCGGAACAA pLKO_005 229 CDS 100% 4.950 3.465 N Zbed3 n/a
7 TRCN0000181580 GAAGCACTGAGTAAGTGGATA pLKO.1 721 CDS 100% 4.950 3.465 N Zbed3 n/a
8 TRCN0000339273 GAAGCACTGAGTAAGTGGATA pLKO_005 721 CDS 100% 4.950 3.465 N Zbed3 n/a
9 TRCN0000182754 CCTATCTCATTCCCTCCCTTT pLKO.1 1467 3UTR 100% 4.050 2.835 N Zbed3 n/a
10 TRCN0000176899 GAGTAAGTGGATAAAGAAGCA pLKO.1 729 CDS 100% 2.640 1.848 N Zbed3 n/a
11 TRCN0000197929 GTAAGTGGATAAAGAAGCAGA pLKO.1 731 CDS 100% 2.640 1.848 N Zbed3 n/a
12 TRCN0000177558 CATGACAACAACAGTGACAAT pLKO.1 820 CDS 100% 4.950 2.970 N Zbed3 n/a
13 TRCN0000177607 CAACAGTGACAATGATATGGT pLKO.1 828 CDS 100% 3.000 1.800 N Zbed3 n/a
14 TRCN0000198928 GTGACAATGATATGGTCACCA pLKO.1 833 CDS 100% 0.264 0.158 N Zbed3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001302538.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.