Transcript: Mouse NM_001305133.1

Mus musculus predicted gene 14296 (Gm14296), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-05-24
Taxon:
Mus musculus (mouse)
Gene:
Gm14296 (102639598)
Length:
3937
CDS:
373..681

Additional Resources:

NCBI RefSeq record:
NM_001305133.1
NBCI Gene record:
Gm14296 (102639598)

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001305133.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000235219 ACAGGAGAGAAACCCTATAAA pLKO_005 988 3UTR 100% 15.000 7.500 Y LOC66376 n/a
2 TRCN0000235327 ACAGGAGAGAAACCCTATAAA pLKO_005 988 3UTR 100% 15.000 7.500 Y OTTMUSG00000016228 n/a
3 TRCN0000243738 CAGGAGAGAAACCCTATAAAT pLKO_005 989 3UTR 100% 15.000 7.500 Y Gm14430 n/a
4 TRCN0000242407 GAAAGTGTGAGCTGGATTAAA pLKO_005 2289 3UTR 100% 15.000 7.500 Y Gm14418 n/a
5 TRCN0000217699 GAGCAACCCTCTGAGTTTATT pLKO.1 490 CDS 100% 15.000 7.500 Y Gm14296 n/a
6 TRCN0000231380 GAGCAACCCTCTGAGTTTATT pLKO_005 490 CDS 100% 15.000 7.500 Y 0610010B08Rik n/a
7 TRCN0000239826 AGAAGGAGTGACCTCCAAATA pLKO_005 616 CDS 100% 13.200 6.600 Y Gm14393 n/a
8 TRCN0000245314 AGAGCAACCCTCTGAGTTTAT pLKO_005 489 CDS 100% 13.200 6.600 Y Gm14325 n/a
9 TRCN0000226091 AGCAACCCTCTGAGTTTATTC pLKO_005 491 CDS 100% 13.200 6.600 Y Gm2004 n/a
10 TRCN0000242399 CAGTCATCTCCGAATACATAA pLKO_005 705 3UTR 100% 13.200 6.600 Y Gm14432 n/a
11 TRCN0000216505 CATAGTCAAATGCATCAAATT pLKO.1 541 CDS 100% 13.200 6.600 Y Gm14296 n/a
12 TRCN0000242349 GAGTGACCTCCAAATACATAA pLKO_005 621 CDS 100% 13.200 6.600 Y Gm14393 n/a
13 TRCN0000200786 GCACATATAGTTGAGAGAAAT pLKO.1 1385 3UTR 100% 13.200 6.600 Y Gm14296 n/a
14 TRCN0000262238 TACAGGAGAGAAACCCTATAA pLKO_005 987 3UTR 100% 13.200 6.600 Y Gm14305 n/a
15 TRCN0000231379 TCACAGCTATAGGTTACATTT pLKO_005 395 CDS 100% 13.200 6.600 Y 0610010B08Rik n/a
16 TRCN0000234269 TCACAGCTATAGGTTACATTT pLKO_005 395 CDS 100% 13.200 6.600 Y 9230108I15Rik n/a
17 TRCN0000242348 ACATACAATTGAAGACCATTT pLKO_005 423 CDS 100% 10.800 5.400 Y Gm14393 n/a
18 TRCN0000239828 ACTGTAACCAATGTGGTAAAG pLKO_005 587 CDS 100% 10.800 5.400 Y Gm14393 n/a
19 TRCN0000347519 AGAAGCAGTCATCTCCGAATA pLKO_005 700 3UTR 100% 10.800 5.400 Y Zfp931 n/a
20 TRCN0000239829 AGGAGAGAAACCCTATGAATG pLKO_005 654 CDS 100% 10.800 5.400 Y Gm14393 n/a
21 TRCN0000284648 ATACAGGAGAGAAACCCTATA pLKO_005 986 3UTR 100% 10.800 5.400 Y Gm14308 n/a
22 TRCN0000243733 ATAGGAATCTCACAGCTATAG pLKO_005 386 CDS 100% 10.800 5.400 Y Gm14322 n/a
23 TRCN0000231382 CAAAGCAGTCATCTCCGAATA pLKO_005 868 3UTR 100% 10.800 5.400 Y 0610010B08Rik n/a
24 TRCN0000234271 CAAAGCAGTCATCTCCGAATA pLKO_005 868 3UTR 100% 10.800 5.400 Y 9230108I15Rik n/a
25 TRCN0000239453 CATACAATTGAAGACCATTTC pLKO_005 424 CDS 100% 10.800 5.400 Y Gm14288 n/a
26 TRCN0000243739 GAATGTAAACAATGTGGTAAA pLKO_005 838 3UTR 100% 10.800 5.400 Y Gm14411 n/a
27 TRCN0000242350 GACTGTAACCAATGTGGTAAA pLKO_005 586 CDS 100% 10.800 5.400 Y Gm14393 n/a
28 TRCN0000242347 GAGTTTATTCAATGTGGTAAA pLKO_005 502 CDS 100% 10.800 5.400 Y Gm14393 n/a
29 TRCN0000239782 TGTGATGCTAGAGACCTATAG pLKO_005 369 5UTR 100% 10.800 5.400 Y Gm6710 n/a
30 TRCN0000243741 ACTCAGGAAGAGTGGGCTTTG pLKO_005 316 5UTR 100% 6.000 3.000 Y Gm14411 n/a
31 TRCN0000200590 CCTATCAATGTAACTAGCTTT pLKO.1 1085 3UTR 100% 4.950 2.475 Y Gm14296 n/a
32 TRCN0000190377 CGAACACATACAGGAGAGAAA pLKO.1 643 CDS 100% 4.950 2.475 Y Gm14296 n/a
33 TRCN0000202246 GCGAACACATACAGGAGAGAA pLKO.1 642 CDS 100% 4.950 2.475 Y Gm14296 n/a
34 TRCN0000190771 GCGAATACATACAGGAGAGAA pLKO.1 894 3UTR 100% 4.950 2.475 Y Gm14296 n/a
35 TRCN0000243742 CACCTATGATGACGTGCATGT pLKO_005 288 5UTR 100% 4.050 2.025 Y Gm14411 n/a
36 TRCN0000201463 CACAAAGCAGTAATCTCCGAT pLKO.1 1034 3UTR 100% 2.640 1.320 Y Gm14296 n/a
37 TRCN0000095226 CATGTGAACTTCACTCAGGAA pLKO.1 304 5UTR 100% 2.640 1.320 Y Zfp950 n/a
38 TRCN0000235325 GTGATGCTAGAGACCTATAAG pLKO_005 370 5UTR 100% 13.200 6.600 Y OTTMUSG00000016228 n/a
39 TRCN0000231378 TGTGATGCTAGAGACCTATAA pLKO_005 369 5UTR 100% 13.200 6.600 Y 0610010B08Rik n/a
40 TRCN0000284677 ACAATGTGGTAAAGCCTTTAC pLKO_005 846 3UTR 100% 10.800 5.400 Y Gm14410 n/a
41 TRCN0000347516 ATATGAGAGTCATAGTCAAAG pLKO_005 531 CDS 100% 10.800 5.400 Y Zfp931 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001305133.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.

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