Transcript: Human NM_001305208.2

Homo sapiens ZFP90 zinc finger protein (ZFP90), transcript variant 5, mRNA.

Source:
NCBI, updated 2019-06-01
Taxon:
Homo sapiens (human)
Gene:
ZFP90 (146198)
Length:
4613
CDS:
215..496

Additional Resources:

NCBI RefSeq record:
NM_001305208.2
NBCI Gene record:
ZFP90 (146198)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001305208.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000218382 ACTCTAGGAACCGTGAAATTA pLKO_005 2174 3UTR 100% 15.000 21.000 N ZFP90 n/a
2 TRCN0000181178 CCAACCTGCATGATCATCAGA pLKO.1 2050 3UTR 100% 3.000 4.200 N ZFP90 n/a
3 TRCN0000230392 ACATAATGCAGACTTACTTAA pLKO_005 848 3UTR 100% 13.200 9.240 N ZFP90 n/a
4 TRCN0000230394 ATAGTTTGACAATGGGTAATT pLKO_005 4178 3UTR 100% 13.200 9.240 N ZFP90 n/a
5 TRCN0000218142 CATAGATCATCGCTTACTAAA pLKO_005 933 3UTR 100% 13.200 9.240 N ZFP90 n/a
6 TRCN0000230393 AGTAACTACAGCATAGATTTC pLKO_005 1542 3UTR 100% 10.800 6.480 N ZFP90 n/a
7 TRCN0000007228 CACCTGTAATCCCAGCACTTT pLKO.1 3344 3UTR 100% 4.950 2.475 Y CFLAR n/a
8 TRCN0000166635 CACCTGTAATCCCAGCACTTT pLKO.1 3344 3UTR 100% 4.950 2.475 Y C19orf31 n/a
9 TRCN0000016211 GCGAATTCACACTGGAGAGAA pLKO.1 1256 3UTR 100% 0.000 0.000 Y ZNF2 n/a
10 TRCN0000243782 TGGAGAGAAACCCTATGAATA pLKO_005 1829 3UTR 100% 13.200 6.600 Y Zfp977 n/a
11 TRCN0000021429 CACACCTGTAATCCCAGCATT pLKO.1 3342 3UTR 100% 4.950 2.475 Y ERN2 n/a
12 TRCN0000138998 CACACCTGTAATCCCAGCATT pLKO.1 3342 3UTR 100% 4.950 2.475 Y P3H4 n/a
13 TRCN0000344020 CACACCTGTAATCCCAGCATT pLKO_005 3342 3UTR 100% 4.950 2.475 Y P3H4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001305208.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.