Transcript: Mouse NM_001311068.1

Mus musculus NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5 (Ndufa5), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-06-10
Taxon:
Mus musculus (mouse)
Gene:
Ndufa5 (68202)
Length:
456
CDS:
140..373

Additional Resources:

NCBI RefSeq record:
NM_001311068.1
NBCI Gene record:
Ndufa5 (68202)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001311068.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000041818 AGGTGATTCTTCAGGCTGAAA pLKO.1 258 CDS 100% 4.950 3.465 N Ndufa5 n/a
2 TRCN0000026449 GAGGTGATTCTTCAGGCTGAA pLKO.1 257 CDS 100% 4.050 2.835 N NDUFA5 n/a
3 TRCN0000041820 GCCTTGCTTCAGGGTGGTGAA pLKO.1 230 CDS 100% 1.350 0.945 N Ndufa5 n/a
4 TRCN0000287834 GCCTTGCTTCAGGGTGGTGAA pLKO_005 230 CDS 100% 1.350 0.945 N Ndufa5 n/a
5 TRCN0000041822 GAAGTGGAAGAGGTGATTCTT pLKO.1 248 CDS 100% 5.625 3.375 N Ndufa5 n/a
6 TRCN0000287763 GAAGTGGAAGAGGTGATTCTT pLKO_005 248 CDS 100% 5.625 3.375 N Ndufa5 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001311068.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.