Transcript: Mouse NM_001311130.1

Mus musculus 5'-3' exoribonuclease 1 (Xrn1), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-06-10
Taxon:
Mus musculus (mouse)
Gene:
Xrn1 (24127)
Length:
10266
CDS:
110..5269

Additional Resources:

NCBI RefSeq record:
NM_001311130.1
NBCI Gene record:
Xrn1 (24127)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001311130.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000296741 CGATGTTGTACAAGGTATAAA pLKO_005 1979 CDS 100% 15.000 21.000 N XRN1 n/a
2 TRCN0000329112 CGATGTTGTACAAGGTATAAA pLKO_005 1979 CDS 100% 15.000 21.000 N Xrn1 n/a
3 TRCN0000119945 CCCAACCTACTGCTAATATAA pLKO.1 4800 CDS 100% 15.000 10.500 N Xrn1 n/a
4 TRCN0000328996 CCCAACCTACTGCTAATATAA pLKO_005 4800 CDS 100% 15.000 10.500 N Xrn1 n/a
5 TRCN0000375261 GTGGTATTAATACCGTTTATT pLKO_005 1796 CDS 100% 15.000 10.500 N Xrn1 n/a
6 TRCN0000375194 TGATATCTATGTGTCAGAAAT pLKO_005 5322 3UTR 100% 13.200 9.240 N Xrn1 n/a
7 TRCN0000119942 GCCTCTTCTTTATGGAACATA pLKO.1 1030 CDS 100% 5.625 3.938 N Xrn1 n/a
8 TRCN0000119943 CCCTACTTTGAAACACATCAA pLKO.1 2086 CDS 100% 4.950 3.465 N Xrn1 n/a
9 TRCN0000329056 CCCTACTTTGAAACACATCAA pLKO_005 2086 CDS 100% 4.950 3.465 N Xrn1 n/a
10 TRCN0000119944 GCCTGTTATGTTCAGGCTATA pLKO.1 1478 CDS 100% 1.080 0.756 N Xrn1 n/a
11 TRCN0000119946 CCTACTTTGAAACACATCAAA pLKO.1 2087 CDS 100% 0.563 0.394 N Xrn1 n/a
12 TRCN0000106535 GCCTGGTCTACAAAGTGAGTT pLKO.1 8582 3UTR 100% 4.950 2.475 Y Gad2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001311130.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.