Transcript: Human NM_001317902.2

Homo sapiens trimethylguanosine synthase 1 (TGS1), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-28
Taxon:
Homo sapiens (human)
Gene:
TGS1 (96764)
Length:
4180
CDS:
388..2328

Additional Resources:

NCBI RefSeq record:
NM_001317902.2
NBCI Gene record:
TGS1 (96764)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001317902.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000303577 GCACTGCCACACCGTACTAAT pLKO_005 2804 3UTR 100% 13.200 18.480 N TGS1 n/a
2 TRCN0000060829 GCCAATTAGATTCCTGTACAA pLKO.1 1109 CDS 100% 4.950 6.930 N TGS1 n/a
3 TRCN0000303512 ATTCCTCACATGGGTTAATAA pLKO_005 1659 CDS 100% 15.000 12.000 N TGS1 n/a
4 TRCN0000369748 ATATGGTGGAATCCCAAATTT pLKO_005 1476 CDS 100% 15.000 10.500 N TGS1 n/a
5 TRCN0000310726 CATCGGCAGGTCAGGTATTTA pLKO_005 1501 CDS 100% 15.000 10.500 N TGS1 n/a
6 TRCN0000303576 GCAACATTATAGTCAACTTTA pLKO_005 822 CDS 100% 13.200 9.240 N TGS1 n/a
7 TRCN0000369677 ATACTTGATGGAATTAGTAAC pLKO_005 1057 CDS 100% 10.800 7.560 N TGS1 n/a
8 TRCN0000060831 CCACTTCAATTTGGTAGGATA pLKO.1 406 CDS 100% 4.950 3.465 N TGS1 n/a
9 TRCN0000060832 CGAGAAGATTGCTGAACACAT pLKO.1 2130 CDS 100% 4.950 3.465 N TGS1 n/a
10 TRCN0000315783 CGAGAAGATTGCTGAACACAT pLKO_005 2130 CDS 100% 4.950 3.465 N TGS1 n/a
11 TRCN0000060830 GCGCAGACAAATAAAGATGAA pLKO.1 1560 CDS 100% 4.950 3.465 N TGS1 n/a
12 TRCN0000090625 GAACAATTTCAGTATTGGGAA pLKO.1 856 CDS 100% 2.640 1.848 N Tgs1 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001317902.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.