Transcript: Human NM_001321454.2

Homo sapiens REV1 DNA directed polymerase (REV1), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-07-07
Taxon:
Homo sapiens (human)
Gene:
REV1 (51455)
Length:
4839
CDS:
212..4075

Additional Resources:

NCBI RefSeq record:
NM_001321454.2
NBCI Gene record:
REV1 (51455)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001321454.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000366596 AGCTCAACAACAGGGTAAATC pLKO_005 699 CDS 100% 13.200 18.480 N Rev1 n/a
2 TRCN0000416910 AGCTCAACAACAGGGTAAATC pLKO_005 699 CDS 100% 13.200 18.480 N REV1 n/a
3 TRCN0000366597 TATCAGTGGGTATACGAAATA pLKO_005 1497 CDS 100% 13.200 18.480 N Rev1 n/a
4 TRCN0000420006 TATCAGTGGGTATACGAAATA pLKO_005 1497 CDS 100% 13.200 18.480 N REV1 n/a
5 TRCN0000155665 CGGTGGAATCGGTTTGGAATA pLKO.1 3978 CDS 100% 10.800 8.640 N REV1 n/a
6 TRCN0000151624 GCTGTTCGTATGGAAATCAAA pLKO.1 2096 CDS 100% 5.625 4.500 N REV1 n/a
7 TRCN0000421694 ATGAAGCGCTGGTAGACATTA pLKO_005 2028 CDS 100% 13.200 9.240 N REV1 n/a
8 TRCN0000376841 GATGTTGCATGGAGGTCAATA pLKO_005 424 CDS 100% 13.200 9.240 N Rev1 n/a
9 TRCN0000422818 GATGTTGCATGGAGGTCAATA pLKO_005 424 CDS 100% 13.200 9.240 N REV1 n/a
10 TRCN0000152109 CATAAGTGCTTGTGAGGTATT pLKO.1 4114 3UTR 100% 10.800 7.560 N REV1 n/a
11 TRCN0000420632 TCAACTATGGAATAAGGTTTA pLKO_005 2466 CDS 100% 10.800 7.560 N REV1 n/a
12 TRCN0000152138 CGCAAGCAAATGGAATTGATT pLKO.1 1692 CDS 100% 5.625 3.938 N REV1 n/a
13 TRCN0000154662 GCTGCTTAACAGTCCTGCAAA pLKO.1 3598 CDS 100% 4.950 3.465 N REV1 n/a
14 TRCN0000151738 CCAGAAGTTAATTGATGGGTT pLKO.1 3646 CDS 100% 2.640 1.848 N REV1 n/a
15 TRCN0000155765 CGACCAGAATGGATTGTGGAA pLKO.1 539 CDS 100% 2.640 1.848 N REV1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001321454.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.