Transcript: Human NM_001322905.2

Homo sapiens synaptosome associated protein 25 (SNAP25), transcript variant 6, mRNA.

Source:
NCBI, updated 2019-09-28
Taxon:
Homo sapiens (human)
Gene:
SNAP25 (6616)
Length:
2113
CDS:
272..892

Additional Resources:

NCBI RefSeq record:
NM_001322905.2
NBCI Gene record:
SNAP25 (6616)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001322905.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000381464 TTCATCCGCAGGGTAACAAAT pLKO_005 668 CDS 100% 13.200 18.480 N SNAP25 n/a
2 TRCN0000156232 CCAACCAACGTGCAACAAAGA pLKO.1 855 CDS 100% 4.950 6.930 N SNAP25 n/a
3 TRCN0000343626 CCAACCAACGTGCAACAAAGA pLKO_005 855 CDS 100% 4.950 6.930 N SNAP25 n/a
4 TRCN0000151472 CCCAACAATACTTTGTGTCTT pLKO.1 1040 3UTR 100% 4.950 6.930 N SNAP25 n/a
5 TRCN0000155722 CGATACACAGAATCGCCAGAT pLKO.1 784 CDS 100% 4.050 3.240 N SNAP25 n/a
6 TRCN0000343625 CGATACACAGAATCGCCAGAT pLKO_005 784 CDS 100% 4.050 3.240 N SNAP25 n/a
7 TRCN0000382191 GATGCTGGTATCAGGACTTTG pLKO_005 392 CDS 100% 10.800 7.560 N SNAP25 n/a
8 TRCN0000348198 GATGCTGGGAAGTGGTTAAAT pLKO_005 874 CDS 100% 15.000 9.000 N Snap25 n/a
9 TRCN0000110591 TGGACCAAATCAATAAGGATA pLKO.1 462 CDS 100% 4.950 2.970 N Snap25 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001322905.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.