Transcript: Human NM_001324242.2

Homo sapiens RNA binding motif protein 41 (RBM41), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-09-29
Taxon:
Homo sapiens (human)
Gene:
RBM41 (55285)
Length:
7005
CDS:
50..1363

Additional Resources:

NCBI RefSeq record:
NM_001324242.2
NBCI Gene record:
RBM41 (55285)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001324242.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000137155 GCTGAGTATGAAGGGTAAAGT pLKO.1 1567 3UTR 100% 5.625 7.875 N RBM41 n/a
2 TRCN0000134374 GACAGATGATATGCTGAGTAT pLKO.1 1555 3UTR 100% 4.950 6.930 N RBM41 n/a
3 TRCN0000137894 GCTACAGGTAGCACTACAGAA pLKO.1 1328 CDS 100% 4.950 6.930 N RBM41 n/a
4 TRCN0000133976 CAACGGATTATTCCTAAGGAT pLKO.1 1619 3UTR 100% 3.000 4.200 N RBM41 n/a
5 TRCN0000420564 GGGAACCAAACAAGGTATTAT pLKO_005 1035 CDS 100% 15.000 12.000 N RBM41 n/a
6 TRCN0000414195 AGAGCCCATTTGCCATATTTC pLKO_005 1765 3UTR 100% 13.200 9.240 N RBM41 n/a
7 TRCN0000414150 GCAAGCATTGCATCTAGTAAA pLKO_005 1213 CDS 100% 13.200 9.240 N RBM41 n/a
8 TRCN0000135042 CCATTGAGGAATGTATGTCTA pLKO.1 165 CDS 100% 4.950 3.465 N RBM41 n/a
9 TRCN0000137915 GTCAGAGGAAGAGATCCGAAA pLKO.1 985 CDS 100% 4.050 2.835 N RBM41 n/a
10 TRCN0000166201 CATGGTGAAACCCTGTCTCTA pLKO.1 4735 3UTR 100% 4.950 2.475 Y ORAI2 n/a
11 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 4657 3UTR 100% 4.950 2.475 Y ERAP2 n/a
12 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 4658 3UTR 100% 13.200 6.600 Y LIAS n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001324242.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.