Transcript: Human NM_001329676.2

Homo sapiens cullin associated and neddylation dissociated 1 (CAND1), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-09-28
Taxon:
Homo sapiens (human)
Gene:
CAND1 (55832)
Length:
11286
CDS:
570..4163

Additional Resources:

NCBI RefSeq record:
NM_001329676.2
NBCI Gene record:
CAND1 (55832)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001329676.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000003463 CGGTTGATGATGGTCTGGATA pLKO.1 3691 CDS 100% 4.950 6.930 N CAND1 n/a
2 TRCN0000352772 CGGTTGATGATGGTCTGGATA pLKO_005 3691 CDS 100% 4.950 6.930 N CAND1 n/a
3 TRCN0000003460 TCCATAATCCAGAGGTTGTAA pLKO.1 4354 3UTR 100% 5.625 4.500 N CAND1 n/a
4 TRCN0000239083 AGTCAAGGAAAGGGCTATTTC pLKO_005 2222 CDS 100% 13.200 9.240 N Cand1 n/a
5 TRCN0000003462 GTACTCTTTCTGCCCTTGATA pLKO.1 2476 CDS 100% 5.625 3.938 N CAND1 n/a
6 TRCN0000342642 GTACTCTTTCTGCCCTTGATA pLKO_005 2476 CDS 100% 5.625 3.938 N CAND1 n/a
7 TRCN0000003459 CTTGCCTAATACACTTCAGAT pLKO.1 2291 CDS 100% 4.950 3.465 N CAND1 n/a
8 TRCN0000342641 CTTGCCTAATACACTTCAGAT pLKO_005 2291 CDS 100% 4.950 3.465 N CAND1 n/a
9 TRCN0000003461 GTCAACAACAAGAACCTACAT pLKO.1 1154 CDS 100% 4.950 3.465 N CAND1 n/a
10 TRCN0000342640 GTCAACAACAAGAACCTACAT pLKO_005 1154 CDS 100% 4.950 3.465 N CAND1 n/a
11 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 6525 3UTR 100% 4.950 2.475 Y ERAP2 n/a
12 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 6526 3UTR 100% 13.200 6.600 Y LIAS n/a
13 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 9073 3UTR 100% 5.625 2.813 Y KLHL30 n/a
14 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 9073 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001329676.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.