Transcript: Human NM_001345961.2

Homo sapiens ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 (ST8SIA6), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-05-31
Taxon:
Homo sapiens (human)
Gene:
ST8SIA6 (338596)
Length:
7063
CDS:
863..1606

Additional Resources:

NCBI RefSeq record:
NM_001345961.2
NBCI Gene record:
ST8SIA6 (338596)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001345961.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000035141 CGCGCCACTAACAGCACATAT pLKO.1 527 5UTR 100% 13.200 18.480 N ST8SIA6 n/a
2 TRCN0000035142 CGCTCGAAGAGTCTAAAGCAA pLKO.1 1266 CDS 100% 3.000 4.200 N ST8SIA6 n/a
3 TRCN0000436740 CGCTCCAACTGACGGAGAAAT pLKO_005 561 5UTR 100% 13.200 10.560 N ST8SIA6 n/a
4 TRCN0000431868 CACTCCAGTTGGGACTAATAT pLKO_005 844 5UTR 100% 15.000 10.500 N ST8SIA6 n/a
5 TRCN0000035143 CCTGCTGTGATGCTGTTCAAA pLKO.1 801 5UTR 100% 5.625 3.938 N ST8SIA6 n/a
6 TRCN0000035140 CCAAGCATCATAACTCTGAAA pLKO.1 1118 CDS 100% 4.950 3.465 N ST8SIA6 n/a
7 TRCN0000035139 GCCCTATTTCTGGAGGACATT pLKO.1 1163 CDS 100% 4.950 3.465 N ST8SIA6 n/a
8 TRCN0000007228 CACCTGTAATCCCAGCACTTT pLKO.1 3988 3UTR 100% 4.950 2.475 Y CFLAR n/a
9 TRCN0000166635 CACCTGTAATCCCAGCACTTT pLKO.1 3988 3UTR 100% 4.950 2.475 Y C19orf31 n/a
10 TRCN0000021429 CACACCTGTAATCCCAGCATT pLKO.1 3986 3UTR 100% 4.950 2.475 Y ERN2 n/a
11 TRCN0000138998 CACACCTGTAATCCCAGCATT pLKO.1 3986 3UTR 100% 4.950 2.475 Y P3H4 n/a
12 TRCN0000344020 CACACCTGTAATCCCAGCATT pLKO_005 3986 3UTR 100% 4.950 2.475 Y P3H4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001345961.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.