Transcript: Mouse NM_001347134.1

Mus musculus major urinary protein 13 (Mup13), mRNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
Mup13 (100039089)
Length:
883
CDS:
68..610

Additional Resources:

NCBI RefSeq record:
NM_001347134.1
NBCI Gene record:
Mup13 (100039089)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001347134.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000272112 ATGAAGAGTGCTCGGAATTAT pLKO_005 303 CDS 100% 15.000 7.500 Y Mup13 n/a
2 TRCN0000270002 TCTACGGGAAGGAACTTTAAT pLKO_005 134 CDS 100% 15.000 7.500 Y Mup10 n/a
3 TRCN0000272266 ACCTAAGACAGACTATGATAA pLKO_005 397 CDS 100% 13.200 6.600 Y Mup7 n/a
4 TRCN0000284694 CTATGGCCGAGAACCAGATTT pLKO_005 478 CDS 100% 13.200 6.600 Y Mup7 n/a
5 TRCN0000272111 CTTATGGCTCATCTCATTAAC pLKO_005 422 CDS 100% 13.200 6.600 Y Mup13 n/a
6 TRCN0000272269 GATGAAGAGTGCTCGGAATTA pLKO_005 302 CDS 100% 13.200 6.600 Y Mup8 n/a
7 TRCN0000281883 GTTCTACGGGAAGGAACTTTA pLKO_005 132 CDS 100% 13.200 6.600 Y Mup7 n/a
8 TRCN0000272110 TAGAAGAACATGGCAACTTTA pLKO_005 216 CDS 100% 13.200 6.600 Y Mup13 n/a
9 TRCN0000270001 TCTTATGGCTCATCTCATTAA pLKO_005 421 CDS 100% 13.200 6.600 Y Mup10 n/a
10 TRCN0000105448 TGACGTATGATGGATTCAATA pLKO.1 366 CDS 100% 13.200 6.600 Y Mup1 n/a
11 TRCN0000272237 TGATGGATTCAATACATTTAC pLKO_005 373 CDS 100% 13.200 6.600 Y Mup7 n/a
12 TRCN0000272050 TTCTACGGGAAGGAACTTTAA pLKO_005 133 CDS 100% 13.200 6.600 Y Mup13 n/a
13 TRCN0000272239 CCTAAGACAGACTATGATAAC pLKO_005 398 CDS 100% 10.800 5.400 Y Mup8 n/a
14 TRCN0000272291 CTATACCTAAGACAGACTATG pLKO_005 393 CDS 100% 10.800 5.400 Y Mup9 n/a
15 TRCN0000297085 GACGTATGATGGATTCAATAC pLKO_005 367 CDS 100% 10.800 5.400 Y Mup13 n/a
16 TRCN0000270003 GTCTCACTGAGAAGTCCAATT pLKO_005 725 3UTR 100% 10.800 5.400 Y Mup10 n/a
17 TRCN0000272268 TATGGCCGAGAACCAGATTTG pLKO_005 479 CDS 100% 10.800 5.400 Y Mup8 n/a
18 TRCN0000105447 CGTATGATGGATTCAATACAT pLKO.1 369 CDS 100% 5.625 2.813 Y Mup1 n/a
19 TRCN0000272250 CCATGCAGAAGAAGCTAGTTC pLKO_005 115 CDS 100% 4.950 2.475 Y Mup9 n/a
20 TRCN0000105446 GCCGAGAACCAGATTTGAGTT pLKO.1 483 CDS 100% 4.950 2.475 Y Mup1 n/a
21 TRCN0000105463 TCCATGCAGAAGAAGCTAGTT pLKO.1 114 CDS 100% 4.950 2.475 Y Mup2 n/a
22 TRCN0000272289 TGGCTCATCTCATTAACGAAA pLKO_005 426 CDS 100% 4.950 2.475 Y Mup9 n/a
23 TRCN0000105460 CCAATTCCAGTCTATCCACAT pLKO.1 740 3UTR 100% 4.050 2.025 Y Mup2 n/a
24 TRCN0000105462 GATAACTTTCTTATGGCTCAT pLKO.1 413 CDS 100% 4.050 2.025 Y Mup2 n/a
25 TRCN0000105445 CCCTTCCTATCCATACAGCAT pLKO.1 669 3UTR 100% 2.640 1.320 Y Mup1 n/a
26 TRCN0000105473 ACCTATCCAATGCCAATCGCT pLKO.1 570 CDS 100% 0.750 0.375 Y Mup5 n/a
27 TRCN0000105464 CAAATCCATGTCTTGGAGAAA pLKO.1 251 CDS 100% 4.950 2.475 Y Mup2 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001347134.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.