Transcript: Mouse NM_001347245.1

Mus musculus zinc finger protein 654 (Zfp654), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-04-24
Taxon:
Mus musculus (mouse)
Gene:
Zfp654 (72020)
Length:
6362
CDS:
72..3410

Additional Resources:

NCBI RefSeq record:
NM_001347245.1
NBCI Gene record:
Zfp654 (72020)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001347245.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000239617 CTGTAAGAGTGGAATTGATAT pLKO_005 842 CDS 100% 13.200 18.480 N n/a
2 TRCN0000123999 CCGATCAAATTGAAGTTTGTT pLKO.1 5018 3UTR 100% 5.625 7.875 N Zfp654 n/a
3 TRCN0000124003 GCTTAATTGTAACAAAGCCAT pLKO.1 3142 CDS 100% 2.640 3.696 N Zfp654 n/a
4 TRCN0000239616 TGAAGCAATGGCTCTTATTAA pLKO_005 701 CDS 100% 15.000 10.500 N n/a
5 TRCN0000239618 ACCTGTAGAAGATCAGCTATT pLKO_005 797 CDS 100% 10.800 7.560 N n/a
6 TRCN0000124002 CCCAGTGTTGAATCACAAGAA pLKO.1 3054 CDS 100% 4.950 3.465 N Zfp654 n/a
7 TRCN0000124001 CCCATTGCTATACCAGAGAAT pLKO.1 2046 CDS 100% 4.950 3.465 N Zfp654 n/a
8 TRCN0000124000 CCTCTGTTATATGAACATGAA pLKO.1 2622 CDS 100% 4.950 3.465 N Zfp654 n/a
9 TRCN0000239620 CAGAACCACCTCCGCAGATAT pLKO_005 492 CDS 100% 13.200 7.920 N n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001347245.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.