Transcript: Human NM_001353958.2

Homo sapiens sodium voltage-gated channel alpha subunit 1 (SCN1A), transcript variant 13, mRNA.

Source:
NCBI, updated 2019-09-01
Taxon:
Homo sapiens (human)
Gene:
SCN1A (6323)
Length:
12806
CDS:
257..6202

Additional Resources:

NCBI RefSeq record:
NM_001353958.2
NBCI Gene record:
SCN1A (6323)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001353958.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000044309 GCGGCTATTGAAAGACGCATT pLKO.1 323 CDS 100% 4.050 5.670 N SCN1A n/a
2 TRCN0000044310 CGGAAGACTTTAGTAGTGAAT pLKO.1 3558 CDS 100% 4.950 3.960 N SCN1A n/a
3 TRCN0000435019 CTCATCTCTCTACGCCATTAT pLKO_005 4946 CDS 100% 13.200 9.240 N SCN1A n/a
4 TRCN0000044311 GCCAATGTCCAGAGGGATATA pLKO.1 1284 CDS 100% 13.200 9.240 N SCN1A n/a
5 TRCN0000426393 TGCTAATTATGTGCACTATTT pLKO_005 651 CDS 100% 13.200 9.240 N SCN1A n/a
6 TRCN0000417278 TTATCTGTTCTCCGTTCATTT pLKO_005 2735 CDS 100% 13.200 9.240 N SCN1A n/a
7 TRCN0000044312 GCTGTGGATAGGATGCACAAA pLKO.1 3215 CDS 100% 4.950 3.465 N SCN1A n/a
8 TRCN0000173658 CTTTGCTTCAAGTTGCCACAT pLKO.1 4443 CDS 100% 4.050 2.835 N Scn1a n/a
9 TRCN0000225832 TCAGCATCATGGGCGTAAATT pLKO_005 4254 CDS 100% 15.000 9.000 N Scn1a n/a
10 TRCN0000044308 CGCATCAATCTGGTGTTCATT pLKO.1 4895 CDS 100% 5.625 3.375 N SCN1A n/a
11 TRCN0000166364 CACACACACACACACACACAA pLKO.1 8379 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001353958.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.